Application of Visible/Near-Infrared Spectroscopy and Hyperspectral Imaging with Machine Learning for High-Throughput Plant Heavy Metal Stress Phenotyping: A Review

Abstract

Heavy metal pollution is becoming a prominent stress on plants. Plants contaminated with heavy metals undergo changes in external morphology and internal structure, and heavy metals can accumulate through the food chain, threatening human health. Detecting heavy metal stress on plants quickly, accurately, and nondestructively helps to achieve precise management of plant growth status and accelerate the breeding of heavy metal-resistant plant varieties. Traditional chemical reagent-based detection methods are laborious, destructive, time-consuming, and costly. The internal and external structures of plants can be altered by heavy metal contamination, which can lead to changes in plants’ absorption and reflection of light. Visible/near-infrared (V/NIR) spectroscopy can obtain plant spectral information, and hyperspectral imaging (HSI) can obtain spectral and spatial information in simple, speedy, and nondestructive ways. These 2 technologies have been the most widely used high-throughput phenotyping technologies of plants. This review summarizes the application of V/NIR spectroscopy and HSI in plant heavy metal stress phenotype analysis as well as introduces the method of combining spectroscopy with machine learning approaches for high-throughput phenotyping of plant heavy metal stress, including unstressed and stressed identification, stress types identification, stress degrees identification, and heavy metal content estimation. The vegetation indexes, full-range spectra, and feature bands identified by different plant heavy metal stress phenotyping methods are reviewed. The advantages, limitations, challenges, and prospects of V/NIR spectroscopy and HSI for plant heavy metal stress phenotyping are discussed. Further studies are needed to promote the research and application of V/NIR spectroscopy and HSI for plant heavy metal stress phenotyping.

Grain Protein Content Phenotyping in Rice via Hyperspectral Imaging Technology and a Genome-Wide Association Study

“…In recent years, the emergence of various optical instruments and analytical techniques has created new opportunities for high-throughput phenotyping. Spectral imaging technology can provide spectral reflectance measurements that are indicative of plant biochemical components and thereby provide nondestructive monitoring through a combination of feature engineering and mathematical modeling [ 7 – 13 ]. Spectral information can also be used to estimate target traits and thus achieve the same genetic analysis efficiency as direct measurement of those traits [ 10 , 14 , 15 ].…”