Abstract:We have isolated the virus from a fecal pellet in the colon of a BALB/c mouse with X-linked immunodeficiency (xid) housed in a room in which there has recently been an epidemic due to mouse hepatitis virus (MHV) and designated it as the MHV-TY strain. Sequence analysis of the MHV-TY strain was performed on major structural, spike (S), membrane (M) and nucleocapsid (N), proteins directly from PCR products. The comparison of nucleotide sequences of MHV-TY with other strains investigated so far revealed that all three structural proteins of the TY strain had some unique amino acid sequences among MHV strains which can be used as markers of this strain. Key words: mouse hepatitis virus, sequence analysis, structural proteins Mouse hepatitis virus (MHV) is one of the most common murine viruses found in laboratory mouse populations [4]. MHV primarily infects the respiratory system or the gastrointestinal tract and causes diverse diseases such as hepatitis, encephalomyelitis and enteritis depending on the strain of the virus and the status of the mice [19,22]. Enterotropic infection is considered to be the most common form of natural infection [3].In one animal room in our facility there has recently been an epidemic of MHV [25]. We isolated an epidemic strain of MHV from a fecal pellet in the colon of a BALB/c mouse with X-linked immunodeficiency (xid) housed in this room, and nucleotide sequences of the major structural proteins of this strain were analyzed.BALB/c xid mice were obtained from the Institute of Medical Science, University of Tokyo and bred in our facility for more than two years. The mice were kept (Received 2 August 1999 / Accepted 18 October 1999 Address corresponding: Y.K. Yamada, Division of Experimental Animal Research, National Institute of Infectious Diseases, Musashimurayama, Japan in negative-pressure ventilated cabinets. All cages and bedding were autoclaved prior to use. A sterile diet and water were provided ad libitum. The animal room was maintained at 23 ± 3°C with a 14-hr light/10-hr dark cycle and 55 ± 5% humidity. We noticed MHV contamination in the room through the results of a routine serological test, although other specific pathogens were negative. Eight 1 to 5-week old mice in the room were exsanguinated after inhalation of chloroform, and tissues of the liver and the brain, and fecal pellets in the colon were taken and frozen at -80°C until use. A piece of the liver or the brain, and a fecal pellet in the colon from each mouse were homogenized in PBS at a concentration of 10%. One hundred µl of ten times diluted homogenate was inoculated on DBT cells which were originally mouse brain tumor cells [10] and routinely used for the propagation and assay of MHV [6].