The Death Domain Fold superfamily of evolutionarily conserved protein-protein interaction domains consists of 4 subfamilies: the death domain, the death effector domain, the caspase recruitment domain, and the PYRIN domain. Interaction of Death Domain Fold containing proteins modulates the activity of several downstream effectors, such as caspases and transcription factors. Recent studies provide evidence for not only homotypic-, but also heterotypic interactions among different sub-families, and even unconventional non-death domain fold interactions. As the number of potential protein associations among Death Domain Fold containing proteins expands and their influence on cellular responses increases, a challenging field for new investigations opens up. This review will focus on PYRIN domain-containing proteins and discuss the recent advances that provide strong evidence that PYRIN domain-mediated signal transduction has broad implications on cellular functions, including innate immunity, inflammation, differentiation, apoptosis, and cancer. Keywords apoptosis; cancer; CARD domain; caspase activation; death domain fold; inflammation; interleukin-1; leucine rich region; NACHT domain; NF-κB; pathogen associated molecular pattern; pathogen recognition receptor; PYRIN domain; signal transduction
THE DEATH DOMAIN FOLD SUPERFAMILY OF PROTEIN INTERACTION DOMAINSThe death domain fold (DDF) is a highly conserved protein interaction domain spanning approximately 90 amino acid residues. This superfamily consists of four subfamilies: The death domain (DD), the death effector domain (DED), the caspase recruitment domain (CARD), and the pyrin N-terminal homology domain (PYRIN domain, PYD). Subfamilies are mainly defined by sequence homology, and display a common three-dimensional structure. However, the sequence identity between the subfamilies is usually lower than 25%, and even within one family mainly restricted to conserved residues of the hydrophobic core.DDF containing proteins have been linked to the activation of caspases and subsequent initiation of apoptosis by the induced proximity mechanism. However, several additional downstream effectors link these domains not only to apoptosis, but also immunity,
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DD-DD, DED-DED, CARD-CARD, PYD-PYD).Yet, recent evidence demonstrated their capability to also form heterotypic interactions among family members, and even unconventional, non-DDF interactions, thereby increasing the number of potential protein associations and cellular responses. The first evidence for unconventional, non-DDF interactions came from the observation that the DED of PEA-15 (PED) interacts with the C-terminal domain of ERK [1]. Also, the DD of Fas (Apo-1, CD95, TNFRSF6) was suggested to associate with calmodulin in a Fas ligand and Ca 2+ -dependent manner [2]. The apoptosis repressor with a CARD (ARC CARD2, Myp) can disrupt the intrinsic, mitochondrial apoptosis pathway by association of its CARD with the C-terminal domain of Bax. By heterotypic interaction, ARC disrupts the ext...