“…The existence of these genes was speculated from epidemiological studies and the discovery of genes with the repetitive sequence motifs -CG-GCGGCAA and -GCCGGTGTTG [Cousins et al, 1998;Kremer et al, 1999]. The PE/PPE family contributes to 10% of the coding capacity with largely unknown functions but speculated to confer antigenic variability [Karboul et al, 2008], evoke host immune responses [Chaitra et al, 2007a, b;Choudhary et al, 2003;Tundup et al, 2008], cause host cell death [Balaji et al, 2007;Basu et al, 2007] and to have diagnostic potential Choudhary et al, 2003;Tundup et al, 2008]. Structurally, the sequences of the PE/ PPE genes show an overall conservation ( fig.…”