Perturbations in the T-cell receptor (TCR) V repertoire were assessed in the CD4 and CD8 T lymphocytes of human immunodeficiency virus (HIV)-infected children who were receiving therapy during the chronic phase of infection by flow cytometry (FC) and PCR analysis. By FC, representation of 21 TCR V subfamilies was assessed for an increased or decreased percentage in CD4 and CD8 T cells, and by PCR, 22 TCR V subfamilies of CD4 and CD8 T cells were analyzed by CDR3 spectratyping for perturbations and reduction in the number of peaks, loss of Gaussian distribution, or clonal dominance. The majority of the TCR V subfamilies were examined by both methods and assessed for deviation from the norm by comparison with cord blood samples. The CD8-T-lymphocyte population exhibited more perturbations than the CD4 subset, and clonal dominance was present exclusively in CD8 T cells. Of the 55 total CD8-TCR V families classified with clonal dominance by CDR3 spectratyping, only 18 of these exhibited increased expression by FC. Patients with high numbers of CD8-TCR V families with decreased percentages had reduced percentages of total CD4 T cells. Increases in the number of CD4-TCR V families with increased percentages showed a positive correlation with skewing. Overall, changes from normal were often discordant between the two methods. This study suggests that the assessment of HIV-induced alterations in TCR V families at cellular and molecular levels yields different information and that our understanding of the immune response to HIV is still evolving.The majority of peripheral blood CD4 and CD8 T cells express the ␣ T-cell receptor (TCR), with the  chain represented by variable segments which are grouped into families based on sequence homology (16). A complete T-cell repertoire is indicative of an intact T-cell population with the potential to recognize a wide range of immunogens. Numerous reports have documented changes in the TCR V repertoire during human immunodeficiency virus (HIV) infection in relation to disease progression and the effect of therapy (4,5,(8)(9)(10)(19)(20)(21)(22)(23). CDR3 length spectratyping (8,19,21) and flow cytometric (FC) analysis of TCR V families labeled with specific monoclonal antibodies (MAbs) (4,7,26) are among the most frequently used assays for the analysis of TCR V repertoire in HIV infection. The CDR3 spectratype is an indicator of the relative proportion of cells in each TCR V family with CDR3 of particular lengths, while labeling of cells with TCR-V-specific MAbs provides a quantitative assessment of the percentages of particular TCR V families in T cells. Thus, evaluation of the TCR V repertoire with MAbs, in combination with CDR3 spectratyping, is expected to provide complementary information. In the present study, we analyzed the TCR V repertoire in the CD4 and CD8 T cells of 22 HIV-infected children by CDR3 length analysis and by FC.
MATERIALS AND METHODSPatient population. TCR V repertoire analyses by PCR and FC were performed concurrently in 22 HIV-infected c...