Electromagnetic topology simplifies a complex analysis area in accordance with electromagnetic coupling. And then electromagnetic topology divides the simplified continuous area into sub-areas and analyzes electromagnetic problems at the sub-areas. Therefore electromagnetic topology has a merit to analyze the electromagnetic coupling in large and complex systems, however simplified modeling technique can generate large errors. In this paper, power balance method is used to estimate errors and subdivide junctions in the electromagnetic topology. The method is applied to analyze conducted and radiated electromagnetic coupling in two kinds of cavity models. Improvement of accuracy was accomplished in accordance with junction subdivision. Moreover we could save computation time and memory comparing with FDTD results.