RNA polymerase (pol) III-dependent transcription is subject to stringent regulation by tumor suppressors and oncogenic proteins and enhanced RNA pol III transcription is essential for cellular transformation and tumorigenesis. Since the c-Jun N-terminal kinases (JNKs) display both oncogenic and tumor suppressor properties, the roles of these proteins in regulating RNA pol III transcription were examined. In both mouse and human cells, loss or reduction in JNK1 expression represses RNA pol III transcription. In contrast, loss or reduction in JNK2 expression induces transcription. The JNKs coordinately regulate expression of all 3 TFIIIB subunits. While JNK1 positively regulates TBP expression, the RNA pol III-specific factors, Brf1 and Bdp1, JNK2 negatively regulates their expression. Brf1 is coregulated with TBP through the JNK target, Elk-1. Reducing Elk-1 expression decreases Brf1 expression. Decreasing JNK1 expression reduces Elk-1 occupancy at the Brf1 promoter, while decreasing JNK2 expression enhances recruitment of Elk-1 to the Brf1 promoter. In contrast, regulation of Bdp1 occurs through JNK-mediated alterations in TBP expression. Altered TBP expression mimics the effect of reduced JNK1 or JNK2 levels on Bdp1 expression. Decreasing JNK1 expression reduces the occupancy of TBP at the Bdp1 promoter, while decreasing JNK2 expression enhances recruitment of TBP to the Bdp1 promoter. Together, these results provide a molecular mechanism for regulating RNA pol III transcription through the coordinate control of TFIIIB subunit expression and elucidate opposing functions for the JNKs in regulating a large class of genes that dictate the biosynthetic capacity of cells.c-jun N-terminal kinases ͉ Elk-1 ͉ TATA-binding protein T he c-jun N-terminal kinases (JNKs) are members of the mitogen-activated protein kinase (MAPK) family. JNKs are activated in response to stress, proinflammatory stimuli, and mitogenic factors (1, 2). Three distinct genes encode the JNKs. JNK1 and JNK2 are ubiquitously expressed, while JNK3 is more selectively expressed in brain, heart, and testis (3). In addition, alternative splicing gives rise to at least 10 JNK isoforms. JNK1 and JNK2 have been shown to phosphorylate transcription factors such as c-Jun, ATF-2, c-Fos, p53, Elk-1, and c-Myc. While initial studies indicated that JNK1 and JNK2 possess redundant functions, subsequent studies support the idea that these proteins also have distinct functions. The JNKs can induce both apoptotic and proliferative responses, depending on the physiological context and the time course of activation (4). The roles of these JNKs in tumorigenesis are controversial (3). Depending on the cell type and stimulus, the JNKs have been shown to stimulate oncogenic transformation or act as tumor suppressors. Identifying the downstream molecular events selectively modulated by JNK1 and JNK2 will importantly clarify their roles in determining the oncogenic state of cells.RNA polymerase (pol) III-dependent transcription and the production of its major products, 5S rR...