Regeneration of plant organs is often the essential step in genetic transformation; however, the regeneration ability of a plant varies depending on the genetic background. By conventional crosses of low-regeneration rice strain Koshihikari with high-regeneration rice strain Kasalath, we identified some quantitative trait loci, which control the regeneration ability in rice. Using a map-based cloning strategy, we isolated a main quantitative trait loci gene encoding ferredoxin-nitrite reductase (NiR) that determines regeneration ability in rice. Molecular analyses revealed that the poor regeneration ability of Koshihikari is caused by lower expression than in Kasalath and the specific activity of NiR. Using the NiR gene as a selection marker, we succeeded in selectively transforming a foreign gene into rice without exogenous marker genes. Our results demonstrate that nitrate assimilation is an important process in rice regeneration and also provide an additional selectable marker for rice transformation.regeneration ability ͉ ferredoxin-nitrate reductase ͉ selectable marker R egeneration of plants from cell culture is a critical step in the production of novel varieties of plants. Generally, it is not easy to culture and regenerate monocot plants, including agronomically important crops such as rice, wheat, and maize. In rice, an efficient culture system using mature seeds has been established based on research with model varieties such as Nipponbare (Japonica) and Kasalath (Indica). However, many leading varieties used for food production, such as Koshihikari in Japan and IR64 in tropical countries, have low regeneration ability in the mature seed culture system, resulting in a serious obstacle to efficient production of transgenic plants. It has been indicated that regeneration ability depends mainly on a few key genes (1-7), but no gene has yet been identified in any plant species. To understand the regeneration process and resolve the low regeneration ability of a leading Japanese variety, Koshihikari, we have attempted to isolate major quantitative trait loci (QTL), which would increase the regeneration ability of Koshihikari.
Materials and MethodsCulture Conditions and Regeneration Test. Mature seeds were dehusked and surface-sterilized in 70% ethanol for 30 s, vigorously shaken in 1.5% sodium hypochlorite for 30 min, and rinsed five times in sterilized water. For the induction of calli, sterilized seeds were placed on the surface of an agar medium containing CHU (N 6 ) basal salt mixture (Sigma), 2 mg͞liter glycine, 0.5 mg͞liter nicotinic acid, 0.5 mg͞liter pyridoxine-HCl, 1 mg͞liter thiamine-HCl, 0.1 g͞liter myo-inositol, 0.3 g͞liter casamino acid, 2.878 g͞liter proline, 2 mg͞liter 2,4-dichlorophenoxyacetic acid, 30 g͞liter sucrose, and 3 g͞liter gelrite. The medium was adjusted to pH 5.8. Seeds were incubated in the medium at 29.5°C. Four weeks after inoculation calli formed from seeds were transferred onto regeneration medium containing MS plant salt mixture (Wako), 5 mg͞liter nicotinic acid, 10 mg͞lit...