Human dental pulp stem cells (hdPScs) present several advantages, including their ability to be non-invasively harvested without ethical concern. The secretome of hdPScs can promote the functional recovery of various tissue injuries. However, the protective effects on hypoxia-induced skeletal muscle injury remain to be explored. The present study demonstrated that c2c12 myoblast coculture with hdPScs attenuated cocl 2-induced hypoxic injury compared with c2c12 alone. The hdPSc secretome increased cell viability and differentiation and decreased G2/M cell cycle arrest under hypoxic conditions. These results were further verified using hDPSC-conditioned medium (hDPSC-CM). The present data revealed that the protective effects of hdPSc-cM depend on the concentration ratio of the cM. In terms of the underlying molecular mechanism, hdPSc-cM activated the Wnt/β-catenin pathway, which increased the protein levels of Wnt1, phosphorylated-glycogen synthase kinase-3β and β-catenin and the mRNA levels of Wnt target genes. By contrast, an inhibitor (XAV939) of Wnt/β-catenin diminished the protective effects of hdPSc-cM. Taken together, the findings of the present study demonstrated that the hDPSC secretome alleviated the hypoxia-induced myoblast injury potentially through regulating the Wnt/β-catenin pathway. These findings may provide new insight into a therapeutic alternative using the hdPSc secretome in skeletal muscle hypoxia-related diseases.