Both surface and groundwater are impacted by chemicals and availability of drinking water meeting the required parameters for health safety continues to remain a challenging task. Chemicals which have led to severe health problems are arsenic, reported to cause skin lesions, cancer, and other ailments and fluoride which lead to dental and skeletal fluorosis when populations are exposed to high levels. Their source is aquifers, containing the mineral salts and health problems are localized to regions. However, their presence in groundwater from new regions is being reported. The other metals of concern are lead, manganese, mercury, cadmium, and chromium which lead to skin, neurological, cardiovascular, reproductive, and immune function disorders and cancer. Source of these metals is mostly industrial, and problem in general is in pockets of heavy industrialization. Persistent organic pollutants (POPs), majority of which are organochlorine pesticides, are also of concern as their presence in variable amounts have been detected in waste-and groundwater. The source of POPs is predominantly discharge of waste and untreated water, sewage, and runoffs from agricultural fields into water bodies. Varying amounts, mostly in small quantities, of pharmaceutical and veterinary drugs residues, nanoparticles, chemicals used for personal hygiene have also been detected in surface water. Some of these have chemical structures similar to hormones and are termed as endocrine disrupters. These are new emerging chemicals of concern. New tools and technologies for their regular monitoring and for treatment of the water are required to safeguard the health from drinking water contaminated by chemicals.