Abstract:New insights into the dynamical properties of water in hydroxyapatite (HAP) nanopores, a model system for the fluid flow within nanosize spaces inside the collagen-apatite structure of bone, were obtained from molecular dynamics simulations of liquid water confined between two parallel HAP surfaces of different sizes (20 Å ≤ H ≤ 240 Å). Calculations were conducted using a coreshell interatomic potential for HAP together with the extended simple point charge model for water. This force field gives an activation… Show more
“…Prakash et al [232] characterized water transport properties by MD simulations applying different water potentials and found that the SPC/E [39] water together with the coreshell potential for hydroxyapatite is the most accurate combination for predicting diffusion properties. With these models, Prakash et al [231] calculated the anisotropic self-diffusion coefficient of the second-order diffusion tensor and found that the perpendicular component is significantly lower than the parallel ones for all the studied widths. The calculation of transport properties showed a dependency on the size of the nanopore, confirming the work of Pham et al [233], which showed this behaviour for water confined in hydroxyapatite pores from 2.0 to 6.0 nm wide at different temperatures.…”
Self-diffusion coefficient of bulk and confined water a critical review of classical molecular simulation studies Tsimpanogiannis, Ioannis N.; Moultos, Othonas A.; Franco, Luís F.M.; Spera, Marcelle B.de M.; Erdös, Mate; Economou, Ioannis G.
“…Prakash et al [232] characterized water transport properties by MD simulations applying different water potentials and found that the SPC/E [39] water together with the coreshell potential for hydroxyapatite is the most accurate combination for predicting diffusion properties. With these models, Prakash et al [231] calculated the anisotropic self-diffusion coefficient of the second-order diffusion tensor and found that the perpendicular component is significantly lower than the parallel ones for all the studied widths. The calculation of transport properties showed a dependency on the size of the nanopore, confirming the work of Pham et al [233], which showed this behaviour for water confined in hydroxyapatite pores from 2.0 to 6.0 nm wide at different temperatures.…”
Self-diffusion coefficient of bulk and confined water a critical review of classical molecular simulation studies Tsimpanogiannis, Ioannis N.; Moultos, Othonas A.; Franco, Luís F.M.; Spera, Marcelle B.de M.; Erdös, Mate; Economou, Ioannis G.
“…In the first model hereafter named CS-water, the interactions between particles were represented by the core shell interatomic potential developed by de Leeuw and Parker for HAP and water systems [18,37], which includes electronic polarizability via the shell model of Dick and Overhauser. This model was used in our previous studies [11,12]. In this CS-water model the phosphate, hydroxyl group, and oxygen-hydrogen (Hw ) bonds are described as the sum of a Morse and a Coulombic potential, the phosphate and water bond angles by a harmonic potential, and non-bonded interactions by Buckingham potentials.…”
Section: Choice Of Different Intermolecular Interactions Modelsmentioning
confidence: 99%
“…This clearly states that two different kind of diffusion mechanism are possible in struc-tures presenting a HAPwater interface. This may be an evolution from a quasi 1D diffusion process in the narrow pores to anisotropic diffusion of water molecules for lower confinement [12].…”
Section: Self-diffusion Coefficient Of Watermentioning
confidence: 99%
“…During biomin-eralization, bone-water interface plays an important role in the mechanism of bone reorganization [10]. Thus, the investigation of HAPwater interface materials received widespread attention to understand the chemical, physical and mechanical properties of these materials considering the confinement effect of water near the HAP surface [5,[11][12][13].…”
“…As methods for preparing nanopipettes of smaller dimensions improve, this technique may be able to probe effects related to confinement, where mass transport properties can change dramatically. [52][53][54]…”
Calcium carbonate (CaCO3) is one of the most well-studied and abundant natural materials on Earth. Crystallisation of CaCO3 is often observed to proceed via an amorphous calcium carbonate (ACC) phase,...
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