The spinless Falicov-Kimball model exhibits outside the particle-hole symmetric point different stable nonhomogeneous charge orderings. These include the well known charge stripes and a variety of orderings with phase separated domains, which can significantly influence the charge transport through the correlated electron system. We show this by investigating a heterostructure, where the Falicov-Kimball model on a finite two-dimensional lattice is located between two non-interacting semi-infinite leads. We use a combination of nonequilibrium Green's functions techniques with a signproblem-free Monte Carlo method for finite temperatures or simulated annealing technique for the ground state to address steady-state transport through the system. We show that different groundstate phases of the central system can lead to simple metallic-like or insulating charge transport characteristics, but also to more complicated current-voltage dependencies reflecting a multi-band character of the transmission function. Interestingly, with increasing temperature, the orderings tend to form transient phases before the system reaches the disordered phase. This leads to nontrivial temperature dependencies of transmission function and charge current.