Analysis of vibrational modes from alpha-synuclein: a theoretical model using density functional theory and Raman spectroscopy

León-Bejarano, Fabiola; Ramírez‐Elías, Miguel G.; Méndez, Martín O.; Guirado-López, R. A.; Alba, Alfonso; Rodríguez-Leyva, Ildelfonso

doi:10.1007/s12553-019-00367-8

Cited by 2 publications

(1 citation statement)

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“…As described in a previous study, 23 the αSyn protein structure was downloaded from the Protein Data Bank database (PDB code: 1 × q8, Human micelle-bound α-synuclein). In Fig.…”

Section: Computed Raman Spectra From Dft Calculationsmentioning

confidence: 99%

Raman Spectroscopy Study of Skin Biopsies from Patients with Parkinson’s Disease: Trends in Alpha-Synuclein Aggregation from the Amide I Region

et al. 2022

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Parkinson's disease (PD) is one of the most common neurological pathologies with a high prevalence worldwide. PD is characterized by Lewy bodies, whose major component is the aggregates of α-synuclein (αSyn) protein. Interestingly, recent works have demonstrated that skin biopsy studies are a promising diagnostic tool for evaluating α-synucleinopathies. In this sense, this work focuses on the detection of αSyn in skin biopsies employing Raman spectroscopy, using three different approaches: 1) the in vitro Raman spectrum of α-synuclein, 2) the ex vivo Raman spectra of human skin biopsies from healthy and Parkinson's disease patients, and 3) theoretical calculations of the Raman spectra obtained from different model αSyn fragments using Density Functional Theory (DFT). Significant differences in the intensity and location of Raman active frequencies in the Amide I region were found when comparing healthy and PD subjects related to α-synuclein conformational changes and variations in their aggregation behavior. In samples from healthy patients, we identified well-known Raman peaks at 1655, 1664, and 1680 〖cm〗^(-1) associated with the normal state of the protein. In PD subjects, shifted Raman bands and intensity variations were found at 1650, 1670, and 1687 〖cm〗^(-1) associated with aggregated forms of the protein. DFT calculations reveal that the shape of the Amide I Raman peak in model αSyn fragments strongly depends on the degree of aggregation. Sizable frequency shifts and intensity variations are found within the highly relevant 1600—1700 cm-1 domain, revealing the sensitivity of the Amide I Raman band to the changes in the local atomic environment. Interestingly, we obtain that the presence of surrounding waters also affects the structure of the Amide I band, leading to the appearance of new peaks in the low-frequency side and a notable broadening of the Raman spectra. These results strongly suggest that, through Raman spectroscopy, it is possible to infer the presence of aggregated forms of αSyn in skin biopsies, a result that could have important implications for understanding α-synuclein related diseases.

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“…As described in a previous study, 23 the αSyn protein structure was downloaded from the Protein Data Bank database (PDB code: 1 × q8, Human micelle-bound α-synuclein). In Fig.…”

Section: Computed Raman Spectra From Dft Calculationsmentioning

confidence: 99%