The transmission characteristics of a metallic film with subwavelength ellipsoid nanohole arrays are investigated by using the three-dimensional finite-difference time-domain (3D-FDTD) method. The extraordinary transmission is attributed to the collaboration of localized waveguide resonance and surface plasmon resonance. The influences of the lattice constant and the hole shape on the transmission are studied. By analyzing the picture of electric field and electromagnetic energy distribution, we show the mechanisms of the two different resonances: Localized waveguide resonance mode can be confined inside the ellipsoid holes region, while electric field and electromagnetic energy are localized separately at the two ends of ellipsoid holes for the surface plasma resonance mode.nanohole arrays, transmission characteristic, localized waveguide resonance, plasmon resonanceThe transmission of a metal film perforated with a periodic array of subwavelength holes is extraordinarily large due to the coupling of light with surface plasma. It was reported by the pioneer Ebbesen et al. [1] in 1998. The surface plasma (SP) are treated as coupled waves, propagating along both film surfaces [2] . Subsequently, the study of the transmission properties of subwavelength apertures has become a very active area of research in electromagnetism, which stimulates the development of many new analytical and numerical approaches. Great interest of the unusual transmission effect generated in the scientific community [3,4] is partly due to its wide range of potential applications [5] . Much attention has been devoted to the underlying physics of the phenomenon [6] . These explanations include: the resonant excitation of SP on the metal surface [7,8] , which is most widely held; the appearance of localized waveguide resonances [9] ; the dependence of resonances on the hole of geometric shape (shape resonance); and the interference of diffracted evanescent waves generated by subwavelength features on the surface [10] . In ref. [11], it was shown that the magneto-optical properties, as well as plasma frequencies of the periodic metal-dielectric composite, depend upon the microstructure and can therefore be controlled by both the magnitude and the direction of the applied dc magnetic field. Recently, hole shape is taken into account, besides the isotropic shapes (such as the circular and square shapes) [12,13] , the nonisotropic shape of inclusions and their dramatic influences on the optical properties have gained particular attention [14][15][16][17][18][19][20] . Works for metal arrays with nonisotropic hole shapes studied previously are mostly ones with equal cross sections in the plane parallel to the metal surface. However, structures with nanoholes of different cross sections have not been studied in detail.In this paper, using the three-dimensional finite-difference time-domain (3D-FDTD) method, we study the optical properties of a gold film perforated with ellipsoid nanoholes described in Figure 1. Two different resonances as follows a...