Uncertainty assessments of herbicide losses from rice paddies in Japan associated with local meteorological conditions and water management practices were performed using a pesticide fate and transport model, PCPF-1, under the Monte Carlo (MC) simulation scheme. First, MC simulations were conducted for ve di erent cities with a prescribed water management scenario and a 10-year meteorological dataset of each city. e e ectiveness of water management was observed regarding the reduction of pesticide runo . However, a greater potential of pesticide runo remained in Western Japan. Secondly, an extended analysis was attempted to evaluate the e ects of local water management and meteorological conditions between the Chikugo River basin and the Sakura River basin using uncertainty inputs processed from observed water management data. e results showed that because of more severe rainfall events, signi cant pesticide runo occurred in the Chikugo River basin even when appropriate irrigation practices were implemented.