An enzyme with fatty acid ␣-oxidation activity (49 nkat mg Ϫ1 ; substrate: lauric acid) was purified from germinating pea (Pisum sativum) by a five-step procedure to apparent homogeneity. The purified protein was found to be a 230-kD oligomer with two dominant subunits, i.e. a 50-kD subunit with NAD ϩ oxidoreductase activity and a 70-kD subunit, homolog to a pathogen-induced oxygenase, which in turn shows significant homology to animal cyclooxygenase. On-line liquid chromatography-electrospray ionization-tandem mass spectrometry revealed rapid ␣-oxidation of palmitic acid incubated at 0°C with the purified ␣-oxidation enzyme, leading to (R)-2-hydroperoxypalmitic acid as the major product together with (R)-2-hydroxypalmitic acid, 1-pentadecanal, and pentadecanoic acid. Inherent peroxidase activity of the 70-kD fraction decreased the amount of the (R)-2-hydroperoxy product rapidly and increased the level of (R)-2-hydroxypalmitic acid. Incubations at room temperature accelerated the decline toward the chain-shortened aldehyde. With the identification of the dual function ␣-dioxygenase-peroxidase (70-kD unit) and the related NAD ϩ oxidoreductase (50-kD unit) we provided novel data to rationalize all steps of the classical scheme of ␣-oxidation in plants.Fatty acid hydroperoxides are reactive intermediates in the oxylipin pathways of fatty acid oxygenation in plants and fungi