Analysis of Genetic Variability in the Caprine Class II MHC CLA DRB3.2(Cahi DRB3.2) gene locus of the Sangamneri goat breed of India

Abstract

The objective of this study was to assess the genetic variability present across the Class II MHC DRB 3.2 gene locus in the Sangamneri goat breed of India. Sixty three single nucleotide variations were observed in CLA-DRB3.2 gene of eleven Sangamneri animals. Sixteen haplotypes with Haplotype diversity of 0.974 were found. Besides the snp(s) having two alleles, both triple and tetra allelic single nucleotide variations were present. Thus, the Class II DRB 3.2 gene of the Sangamneri goat breed animals (CLA-DRB3.2/ Cahi DRB3.2) was exhibiting a very high degree of genetic polymorphism. Of the sixty three single nucleotide variations, fifty variations were non-synonymous i.e. they resulted in a change in the corresponding amino acid encoded by the triplet codon in which they were existing. Both conservative and non-conservative amino acid changes were observed to occur. Rich diversity of the DRB3.2 gene reflected well on the ability of the Sangamneri animals to survive in the harsh climatic condition(s), exposed to all kinds of pathogen(s) existing in the environment.