Anaerobic Oxidation of Oil by Microbial Communities of Bottom Sediments of a Natural Oil Seepage Site (Bolshaya Zelenovskaya, Middle Baikal)

Abstract

The microbial communities of bottom sediments of the Bolshaya Zelenovskaya oil seepage site (Lake Baikal) were investigated to assess their diversity and potential functional activity in the anaerobic degradation of oil. Microorganisms of the subsurface and deep sediment layers were grown in enrichment cultures supplemented with oil and various electron acceptors for 1 year at 10°C, and it was found that the concentrations of n-alkanes and polyaromatic hydrocarbons decreased by 1.2–2 and 2.2–2.8 times, respectively. Hydrocarbon conversion was accompanied by generation of hydrocarbon gases (methane and ethane). The microbial community of subsurface sediments had a higher bacterial diversity than the community of deep horizons and was composed of microorganisms specialized in degradation of a broad range of substrates, including oil hydrocarbons. The community of the deep sediment layer was dominated by Atribacterota, Caldisericota, and Bathyarchaeia (Thermoproteota), as well as members of the “rare biosphere”: Elusimicrobiota and Candidatus Hadarchaeota. Apparently, oil degradation in the bottom sediments of Lake Baikal is primarily mediated by members of the phyla Bacillota, Pseudomonadota, Chloroflexota, Actinomycetota, Desulfobacterota, Atribacterota, Halobacteriota, and Bathyarchaeia (Thermoproteota).