An RFLP linkage map for loblolly pine based on a three-generation outbred pedigree

Devey, M. E.; Fiddler, Troy A.; Liu, B. H.; Knapp, Steven J.; Neale, David B.

doi:10.1007/bf00223631

Cited by 89 publications

(34 citation statements)

References 13 publications

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“…To our knowledge, only two species have been mapped with RFLPs: Pinus taeda (Devey et al, 1994) and Populus trichocarpa x P deltoides (Bradshaw et al, 1994 (Soller, 1978 The proposed strategy assumes that a specific QTL has already been detected in an FS family and that only those segments containing QTLs of interest are tracked in the two HS progenies. Therefore, the additional genotyping costs required for the estimation of the average QTA-effects may be lower than in the mapping experiment.…”

Section: Discussionmentioning

confidence: 99%

Estimation of the average effects of specific alleles detected by the pseudo-testcross QTL mapping strategy

Plomion¹,

Durel²

1996

Genet. Sel. Evol.

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Section: Discussionmentioning

confidence: 99%

Estimation of the average effects of specific alleles detected by the pseudo-testcross QTL mapping strategy

Plomion¹,

Durel²

1996

Genet. Sel. Evol.

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“…The advent of DNA-based molecular markers led to the first genomic maps of forest trees (Bradshaw et al 1994;Devey et al 1994). Genetic analysis was greatly facilitated by the simplified segregation in the haploid mega gametophyte of conifers and by the availability of polymerase chain reaction (PCR)-based molecular markers.…”

Section: Application Of Genomics In Forest Treesmentioning

confidence: 99%

Genomics, Domestication, and Evolution of Forest Trees

Sederoff

Myburg²,

Kirst³

2009

Cold Spring Harbor Symposia on Quantitative Biology

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“…The loblolly pine genetic maps used in QTL analyses have been constructed primarily from RFLP (restriction fragment length polymorphisms) markers [7,10,28]. Although an efficient method of mapping cDNAs, an RFLP analysis detects all members of multigene families, including pseudogenes [28].…”

Section: Genetic Markers and Mappingmentioning

confidence: 99%

Molecular dissection of the quantitative inheritance of wood property traits in loblolly pine

Neale

Sewell²,

Brown³

2002

Ann. For. Sci.

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-Significant progress has been made toward the molecular dissection of the quantitative inheritance of wood property traits in loblolly pine (Pinus taeda L.) and several other forest tree species. QTL mapping experiments have been used to reveal the approximate number of genes controlling traits such as wood specific gravity and microfibril angle and the individual effects of these genes on the total phenotypic variance for the trait. These analyses help to define the scope of the challenge to identify genes controlling complex traits. Verification experiments are needed to be certain of QTLs and to determine the effects of environmental variation and differences among genetic backgrounds. Genetic marker by QTL associations might be used for within family marker-aided breeding, although this application will have limited impact on wood quality improvement in pine. New technologies are being used to identify the genes underlying QTLs. Candidate genes can be identified by a variety of approaches such as functional studies, gene mapping and gene expression profiling. Once candidate genes are identified then it is possible to discover alleles of these genes that have direct effects on the phenotype. This will be accomplished by finding SNPs in linkage disequilibrium with the causative polymorphism. Discovery of such markers will enable marker-aided selection of favorable alleles and can be used for both family and within family breeding. DNA marker technologies will complement traditional breeding approaches to improve wood quality in parallel with growth and yield traits.QTL / wood properties / SNP / marker-aided breeding / loblolly pine Résumé -Décomposition au niveau moléculaire de l'hérédité quantitative des critères de qualité du bois de pin à l'encens (Loblolly pine, Pinus taeda). On a réalisé des progrès significatifs dans le domaine de la décomposition au niveau moléculaire de l'hérédité des critères de qualité du bois de Pinus taeda ainsi que de diverses espèces d'arbres forestiers. On a réalisé des essais de cartographie de QTL pour déterminer le nombre approximatif de gènes contrôlant des critères tels que la densité spécifique, l'angle des microfibrilles et pour estimer l'effet de ces gènes sur la variance phénotypique totale de ces critères. Ces analyses aident à définir le champ d'investigation permettant d'identifier les gènes contrôlant des critères complexes. Il convient de procéder à des expérimentations pour vérifier la validité des QTL, pour détecter les effets de variations des facteurs du milieu, et pour apprécier des différences éventuelles dues à la base génétique des populations en cause. La sélection intra-famille assistée par marqueur peut faire appel à des marqueurs génétiques associés aux QTL. Néanmoins cette voie n'ouvre que des perspectives limitées d'application pour l'amélioration de la qualité du bois chez les pins. On fait appel à des nouvelles technologies pour identifier les gènes qui sont à la base des QTL. Toute une série d'approches permettent d'identifier les gènes c...

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An RFLP linkage map for loblolly pine based on a three-generation outbred pedigree

Cited by 89 publications

References 13 publications

Estimation of the average effects of specific alleles detected by the pseudo-testcross QTL mapping strategy

Estimation of the average effects of specific alleles detected by the pseudo-testcross QTL mapping strategy

Genomics, Domestication, and Evolution of Forest Trees

Molecular dissection of the quantitative inheritance of wood property traits in loblolly pine

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