An Overview of the
            <i>Arabidopsis</i>
            Proteome

Bourguignon, Jacques; Jaquinod, Michel

doi:10.1002/9780470369630.ch10

Cited by 6 publications

(4 citation statements)

References 132 publications

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“…In this context, proteomics offers unique insight into the cellular function at the level of cell, organelles, tissues, organs and whole organisms 42. Figure 1 highlights where we are on the plant proteomics front, with model species including Arabidopsis 43–46 and rice 24, 47 paving the way for emerging model and non‐model plants to be involved in proteomics research (for further reading on the subject, readers are referred to 8, 48, 49). We must recognize the fact that plant proteomics lags behind yeast and human proteomics as shown by a search of the number of publications in these disciplines from the ISI Web of Science (May 2010).…”

Section: Proteomicsmentioning

confidence: 99%

Time to articulate a vision for the future of plant proteomics – A global perspective: An initiative for establishing the International Plant Proteomics Organization (INPPO)

Agrawal¹,

Job

Zivy

et al. 2011

Proteomics

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Given the essential role of proteomics in understanding the biology of plants, we are establishing a global plant proteomics organization to properly organize, preserve and disseminate collected information on plant proteomics. We call this organization 'International Plant Proteomics Organization (INPPO; http://www.inppo.com).' Ten initiatives of INPPO are outlined along with how to address them in multiple phases. As our vision is global, we sincerely hope the scientific communities around the world will come together to support and join INPPO.

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Section: Proteomicsmentioning

confidence: 99%

Time to articulate a vision for the future of plant proteomics – A global perspective: An initiative for establishing the International Plant Proteomics Organization (INPPO)

Agrawal¹,

Job

Zivy

et al. 2011

Proteomics

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“…[2]) the technological improvements on sample preparation, use of IPG technology, high-resolution 2-D GE, in-gel digestion of silver nitrate-stained proteins, and the general strategy for rice proteome analysis, till mid-2007 [2]. Indeed, rice proteomics has come to almost match the level of proteomics re-search in Arabidopsis (for review see [3]). Although, it is "not a race," the gap is closing steadily.…”

Section: Where Is Rice Proteomics Today -Facts?mentioning

confidence: 99%

Rice proteomics: Ending phase I and the beginning of phase II

2009

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Rice is a critically important food crop plant on our planet. It is also an excellent model plant for cereal crops, and now in position to serve as a reference plant for biofuel production. Proteomics study of rice therefore is crucial to better understand "rice" as a whole. Rice proteomics has moved well beyond the initial proteome analysis in the early to late 1990s. Since the year 2000, numerous proteomic studies have been performed in rice during growth and development and against a wide variety of environmental factors. These proteomic investigations have established the high-resolution 2-D reference gels of rice tissues, organs, and organelle under normal and adverse (stressed) conditions by optimizing suitable, reproducible systems for gel, and MS-based proteomic techniques, which "rejuvenated" the rice proteome field. This constituted the "phase I" in rice proteomics, and resulted in rice being labeled as the "cornerstone" of cereal food crop proteomes. Now, we are in position to state that rice proteomics today marks the "beginning of phase II". This is due to the fact that rice researchers are capable of digging deeper into the rice proteome, mapping PTMs (in particular reversible protein phosphorylation), performing inter- and intra-species comparisons, integrating proteomics data with other "omic" technologies-generated data, and probing the functional aspect of individual proteins. These advancements and their impact on the future of rice proteomics are the focus of this review.

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“…But for now, we are devoted to its study and are seeing progress at many fronts. We must reemphasize that rice has its own importance like Arabidopsis , does 7–11. Why is this?…”

Section: Introductionmentioning

confidence: 99%

“…First, rice is a crop, which provides the seed we eat, whereas Arabidopsis is a weed. With due respect, Arabidopsis is a very important weed that has propelled advances in the plant functional genomics in the last decade 7–11. Second, there are more protein and gene components in rice than Arabidopsis .…”

Section: Introductionmentioning

confidence: 99%

Rice proteomics: A move toward expanded proteome coverage to comparative and functional proteomics uncovers the mysteries of rice and plant biology

Agrawal¹,

Rakwal

2011

Proteomics

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Growing rice is an important socio-economic activity. Rice proteomics has achieved a tremendous progress in establishing techniques to proteomes of almost all tissues, organs, and organelles during the past one decade (year 2000-2010). We have compiled these progresses time to time over this period. The present compilation discusses proteomics research in rice published between 1st April 2008 and 30th July 2010. Progress continues mainly towards protein cataloging deep into the proteome with high-confident protein assignment and some functional significance than ever before by (i) identifying previously unreported/low-abundance proteins, (ii) quantifying relative/absolute values of proteins, (iii) assigning protein responses to biotic/abiotic stresses, (iv) protein localization into organelles, (v) validating previous proteomes and eliminating false-positive proteins, and (vi) discovering potential biomarkers for tissues, organs, organelles, and for screening transgenic plants and food-safety evaluation. The notable achievements in global mapping of phosphorylation sites and identifying several novel secreted proteins into the extracellular space are worth appreciating. Our ever-increasing knowledge on the rice proteomics is beginning to impact the biology of not only rice, but also crops and plants. These major achievements will be discussed in this review keeping in mind newcomers, young, and established scientists in proteomics and plants.

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An Overview of the Arabidopsis Proteome

Cited by 6 publications

References 132 publications

Time to articulate a vision for the future of plant proteomics – A global perspective: An initiative for establishing the International Plant Proteomics Organization (INPPO)

Time to articulate a vision for the future of plant proteomics – A global perspective: An initiative for establishing the International Plant Proteomics Organization (INPPO)

Rice proteomics: Ending phase I and the beginning of phase II

Rice proteomics: A move toward expanded proteome coverage to comparative and functional proteomics uncovers the mysteries of rice and plant biology

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