“…These initiatives ultimately led to the cage-free egg layer management operations becoming a part of commercial egg production ( Anderson, 2009 ; Holt et al, 2011 ; Mench et al, 2011 ). In turn, this shift in housing management has led to unique challenges in laying hen welfare, health, and performance, such as increased exposure to certain diseases and parasites ( Lay et al, 2011 ; Jeni et al, 2021 ). While bird physiology is critical to responses to these challenges, the gastrointestinal tract ( GIT ) and its concomitant microbial ecology are also important ( Jeni et al, 2021 ).…”