Although single‐cell omics studies have gained high popularity in recent years, isolation of healthy single cells from primary samples remains challenging and, in many cases, the critical step for a successful experiment. The virtues and limitations of conventional cell sorting strategies, such as manual picking and flow cytometric sorting, are briefly analyzed here and the unique opportunities for microfluidics from the technological perspective are discussed. It is being reasoned that, by combining assessment of healthy features and high‐throughput sorting of single cells, microfluidics will play an important role in retrieving specific single cells for highly accurate and precise omics analyses. With further incorporation of functional features, such as microenvironmental stimulations and response readouts at the single‐cell level, microfluidics will become an integrative research tool that brings many new possibilities in biomedical studies at the finest resolution.