We are interested in determining which amino acid pairs can be substituted for the disulfide (S-S) bonds in proteins without disrupting their native structures under physiological conditions. In this study, we focused on the intradomain S-S bonds in Ig fold domains and aimed to determine a simple rule for replacement of their S-S bonds. The cysteines of four different Ig fold domains were mutated randomly, and the amino acid pairs substituted for the S-S bonds were screened by the method utilizing a cellular quality control system. Among the 36 selected mutants, 31 were natively folded without S-S bonds, as judged from the cooperativity of thermal unfolding. In addition, the selected mutant llama heavy chain antibodies retained antigen-binding affinity. At least two of the pairs Ala:Ala, Ala:Val, Val: Ala, and Val:Val were found in the selected mutants for all four different Ig fold domains, and they were stably folded at 30°C. This suggests that examination of these four pairs could be enough to obtain natively folded Ig fold domains without S-S bonds.
Native disulfide (S-S)1 bonds in proteins stabilize their functional structures, and the removal of an S-S bond results in marked destabilization of these proteins (1-8). It is of interest to determine which amino acid pairs can be substituted for the S-S bonds without disrupting their native structures under physiological conditions. Many S-S-bonded proteins are often regarded as targets for industrial and pharmaceutical uses. For practical applications, efficient production of these proteins with recombinant technology is essential, and the in vitro formation of correct S-S bonds is one of the most challenging problems for the preparation of functional recombinant proteins. Eliminating even one S-S bond critically decreases the possible S-S-bonding combinations, which results in higher yields of active proteins.In this study, we focused on the replacement of intradomain S-S bonds in Ig fold domains. Four typical Ig fold domains were used, and amino acid pairs substituted for S-S bonds were selected by cellular quality control screening. Then, the selected mutants were examined for their ability to form the native structures using CD and functional assay. Two of the four Ig fold domains tested here were variable fragments, i.e. the variable region of the heavy chain of camelid heavy chain antibody (VHH) and an engineered mouse V L domain ( graft). The other two were 2-microglobulin (2-m) and the constant domains of the human light chain (C L fragment). The VHH used here recognizes human chorionic gonadotropin (hCG) as an antigen (9). The graft is based on the sequence of the humanized 4D5-derived V L domain artificially designed to change the antigen specificity and interdomain interactions (10 -12).Our screening method, which utilizes a cellular quality control system for the secretory pathway in Saccharomyces cerevisiae and is referred to as "cellular quality control screening," was developed to screen for sequences that can fold into the native structures u...