Structures of the prokaryotic K þ channel, KcsA, highlight the role of the selectivity filter carbonyls from the GYG signature sequence in determining a highly selective pore, but channels displaying this sequence vary widely in their cation selectivity. Furthermore, variable selectivity can be found within the same channel during a process called C-type inactivation. We investigated the mechanism for changes in selectivity associated with inactivation in a model K þ channel, KcsA. We found that E71A, a noninactivating KcsA mutant in which a hydrogen-bond behind the selectivity filter is disrupted, also displays decreased K þ selectivity. In E71A channels, Na þ permeates at higher rates as seen with 86 Rb þ and 22 Na þ flux measurements and analysis of intracellular Na þ block. Crystal structures of E71A reveal that the selectivity filter no longer assumes the "collapsed," presumed inactivated, conformation in low K þ , but a "flipped" conformation, that is also observed in high K þ , high Na þ , and even Na þ only conditions. The data reveal the importance of the E71-D80 interaction in both favoring inactivation and maintaining high K þ selectivity. We propose a molecular mechanism by which inactivation and K þ selectivity are linked, a mechanism that may also be at work in other channels containing the canonical GYG signature sequence. P otassium (K þ ) channels exhibit the remarkable feature of catalyzing rapid ion conduction while maintaining strong selectivity for K þ over Na þ . The extensive K þ channel superfamily contains many members that have different selectivities, ranging from nonselective cation channels to highly selective K þ channels, yet containing the same canonical GYG sequence. These residues form the narrow selectivity filter, in which the backbone carbonyls are positioned to coordinate dehydrated potassium ions (1). These carbonyls are constrained by the surrounding protein structure, which forms an intricate network of hydrogen bonds and salt bridges. In inward rectifying potassium (Kir) channels, a key structural feature of this network is a salt bridge that forms a molecular "bowstring" (2) bridging the top and bottom of the selectivity filter loop (2, 3) (Fig. 1). Alterations in this salt bridge are known to disrupt selectivity (2, 4, 5); several mutations have dramatic effects on permeation, rendering the channel essentially nonselective and highly permeable to Na þ . It has also been proposed that members of one subgroup of this family, the HCN channels, are less K þ selective because they lack this network of molecular restraints (6), but the relevance of this structural network for selectivity in channels other than inward rectifiers, as well as the mechanism responsible for variable selectivity, remains to be seen.Furthermore, alterations in the equivalent salt bridge residues that affect selectivity in the Kir channel family also lead to the induction of a phenomenon similar to C-type inactivation in voltage-gated K þ channels (7). There is also a correlation between C-type inac...