Laboratory column experiments were conducted to evaluate the feasibility of injectable apatite method for the sequestration of Sr-90 in groundwater. The columns were tested to evaluate the rate of citrate biodegradation, the amounts of apatite formed, and the treatability of strontium by the sediment and apatite. The results showed the decreases in citrate, calcium, and phosphate concentrations and the increases in alkalinity and citrate degradation products (acetate and formate) in the columns, suggesting that the citrate degradation and formation of calcium phosphate are occurring. Although the calcium and phosphate were not completely consumed within the columns, some amounts of apatite were formed and it showed an ability to treat strontium in groundwater. This study provides a fundamental understanding of reaction mechanisms for the injectable apatite sequestration method for Sr-90 removal.