Both aerobic and anaerobic membrane bioreactors (MBRs) are able to remove emerging contaminants from wastewater at high efficiencies. However, the main bottleneck of this technology is membrane biofouling. Coating heavy metal nanoparticles on the surface of membrane has been proposed as an effective antifouling strategy. Nevertheless, metal nanoparticles can potentially result in detrimental impact on the overall functionality of the MBRs. This review aims to understand how nanoparticles impact MBRs. To achieve this aim, the review starts off by illustrating the antibacterial mechanisms of nanoparticles. The review then critically evaluates past studies that illustrate the antibacterial effect of nanoparticles against pure bacterial cultures and biofilm-associated populations. Finally, the review discusses if the presence of nanoparticles would affect the overall performance of aerobic and anaerobic biological processes. Specifically, the impact of heavy metal nanoparticles on nitrogen and phosphorus removal process of aerobic MBRs were discussed. The effect on anaerobic MBR, which is comprised of hydrolysis, acidogenesis, acetogenesis and methanogenesis stages, was also reviewed.