Molecular dynamics (MD) simulations are used to probe the origin of the unexpected temperature dependence of salt accumulation in the C-terminal region of the protein human lymphotactin. As in previous MD simulations, sodium ions accumulate in an enhanced manner near the C-terminal helix at the lower temperature, while the temperature dependence of chloride accumulation is much weaker and slightly positive. In a designed mutant in which all positively charged residues in the C-terminal helix are replaced with neutral polar groups (Ser), the unexpected temperature dependence of the sodium ions is no longer observed. Therefore, these simulations convincingly verified the previous hypothesis that the temperature dependence of ion-protein association is sensitive to the local sequence. This is explained qualitatively in terms of the entropy of association between charged species in solution. These findings have general implications for the interpretation of thermodynamic quantities associated with binding events where ion release is important, such as protein-DNA interactions.Biomolecules exist in a heterogeneous cellular environment to play their functional roles. It has been widely recognized that environmental factors such as temperature and the presence of small solutes and ions can influence the conformational stabilities of biomolecules and therefore their function (1-3). For example, a vast amount of literature has shown that different salt ions preferentially stabilize the native or denatured state of proteins and therefore modulate the folding-unfolding equilibrium (4-7). Weak solute effects have also been proposed to be relevant to the longrange communication of biomolecules in cellular environments (2). A quantitative theory that is capable of predicting the effect of identity and concentration of small solutes on the structure and stability of biomolecules, however, is not yet available. Therefore, it is of interest to employ atomistic simulations in revealing detailed descriptions for the interaction between biomolecules and small solutes as well as how the interaction depends on environmental variables such as temperature. The insights will provide essential clues regarding the molecular mechanism that biomolecules employ to respond and adapt to environmental variations.A remarkable example in this context is the human lymphotactin (hLtn).1 Recent NMR experiments have shown that hLtn converts between two distinct folds under different salt and temperature conditions, and it also tends to dimerize under the high-temperature (∼45°C) and low-salt condition (8). In our recent molecular dynamics (MD) simulation study of hLtn (9), an intriguing finding is that sodium ions, and chloride to a lesser degree, tend to strengthen their association with the C-terminal region of hLtn as the temperature decreases. This is unexpected since the dehydration free energies of both ions and charged side chains are lower at higher temperatures, and thus, ion-protein association is expected to be stronger at the hi...