Abstract:Any gene mutation during the mitotic cell cycle of a eukaryotic cell can be algebraically represented by an isotopism of the evolution algebra describing the genetic pattern of the inheritance process. We identify any such pattern with a total-colored graph so that any isotopism of the former is uniquely related to an isomorphism of the latter. This enables us to develop some results on graph theory in the context of the molecular processes that occur during the S-phase of a mitotic cell cycle. In particular, … Show more
“…Therefore, while we cannot make the case as in Star Trek that space is the final frontier, mathematical and computational analysis of space should allow us to re-vision biological image analysis by seriously applying graph theory, computational geometry, and spatial statistics. Recent articles in Σ Mathematics have described the importance of graph theory in biology: RNA structural motifs in viruses [1]; 3D icosahedra [2]; and non-Mendelian genetics [3]. While these articles address important mathematical concepts, they do not discuss the general utility of graph theory to biological problems.…”
Every biological image contains quantitative data that can be used to test hypotheses about how patterns were formed, what entities are associated with one another, and whether standard mathematical methods inform our understanding of biological phenomena. In particular, spatial point distributions and polygonal tessellations are particularly amendable to analysis with a variety of graph theoretic, computational geometric, and spatial statistical tools such as: Voronoi polygons; Delaunay triangulations; perpendicular bisectors; circumcenters; convex hulls; minimal spanning trees; Ulam trees; Pitteway violations; circularity; Clark-Evans spatial statistics; variance to mean ratios; Gabriel graphs; and, minimal spanning trees. Furthermore, biologists have developed a number of empirically related correlations for polygonal tessellations such as: Lewis’s law (the number of edges of convex polygons are positively correlated with the areas of these polygons): Desch’s Law (the number of edges of convex polygons are positively correlated with the perimeters of these polygons); and Errara’s Law (daughter cell areas should be roughly half that of their parent cells’ areas). We introduce a new Pitteway Law that the number of sides of the convex polygons in a Voronoi tessellation of biological epithelia is proportional to the minimal interior angle of the convex polygons as angles less than 90 degrees result in Pitteway violations of the Delaunay dual of the Voronoi tessellation.
“…Therefore, while we cannot make the case as in Star Trek that space is the final frontier, mathematical and computational analysis of space should allow us to re-vision biological image analysis by seriously applying graph theory, computational geometry, and spatial statistics. Recent articles in Σ Mathematics have described the importance of graph theory in biology: RNA structural motifs in viruses [1]; 3D icosahedra [2]; and non-Mendelian genetics [3]. While these articles address important mathematical concepts, they do not discuss the general utility of graph theory to biological problems.…”
Every biological image contains quantitative data that can be used to test hypotheses about how patterns were formed, what entities are associated with one another, and whether standard mathematical methods inform our understanding of biological phenomena. In particular, spatial point distributions and polygonal tessellations are particularly amendable to analysis with a variety of graph theoretic, computational geometric, and spatial statistical tools such as: Voronoi polygons; Delaunay triangulations; perpendicular bisectors; circumcenters; convex hulls; minimal spanning trees; Ulam trees; Pitteway violations; circularity; Clark-Evans spatial statistics; variance to mean ratios; Gabriel graphs; and, minimal spanning trees. Furthermore, biologists have developed a number of empirically related correlations for polygonal tessellations such as: Lewis’s law (the number of edges of convex polygons are positively correlated with the areas of these polygons): Desch’s Law (the number of edges of convex polygons are positively correlated with the perimeters of these polygons); and Errara’s Law (daughter cell areas should be roughly half that of their parent cells’ areas). We introduce a new Pitteway Law that the number of sides of the convex polygons in a Voronoi tessellation of biological epithelia is proportional to the minimal interior angle of the convex polygons as angles less than 90 degrees result in Pitteway violations of the Delaunay dual of the Voronoi tessellation.
“…Falcon et al [17] derive some results on graph theory in the context of molecular processes occurring during the S-phase of a mitotic cell cycle. After presenting some basic concepts on genetics, genetic algebras, evolution algebras, graph theory, and isotopisms of algebras, they introduce a total-colored graph that can be associated with any given evolution algebra over a finite field.…”
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