The stream continuum concept suggests that the physical structure of the stream channel coupled with the hydrological cycle and energy inputs results in a consistent pattern of community structure and function along a stream. I evaluated this concept in a headwater fish community along two physical gradients: upstream to downstream and riffle to pool.Habitat diversity and volume increased from upstream to downstream, and from riffle to pool. Temporal variation in habitat diversity was greater upstream. Upstream, and in riffles, habitat volume tended to vary more with time. Fluctuations in rainfall regime caused annual variation in habitat, especially in volume. Benthic insect density was highest from autumn (October-November) through spring (May-June). Following emergence of adults in late spring, invertebrate densities were low in summer in areas with riparian vegetation, but were not lower where riparian vegetation was absent and stable substrates were present. Along a gradient of substrates from silt-sand to gravel-rock, insect production increased, as indicated by adults and pupae in the drift. Peak resource availability for insectivore-piscivore fishes occurred in late summer and autumn, due to increased abundance of young-of-the-year fish.Pool and raceway-pool habitat guilds and insectivore and insectivore-piscivore trophic guilds contained the largest number of species. Increases in species richness were primarily associated with the addition of deeper habitats. Species richness of the pool insectivore-piscivore guild was especially variable over time. Biomass in shallow areas consisted predominantly of generalized insectivores. In deep, stable habitats, generalized insectivores were replaced as the predominant trophic group by insectivore-piscivores and large benthic insectivores. Immigration of fish occurred in spring and autumn, the periods of highest resource availability. Immigration between midriver and headwater regions primarily involved older age classes (III+), and was associated with changes in flow regime, habitat structure, and seasonal dynamics of the resource base of particular trophic groups. Flow regime and habitat volume appeared to be important factors limiting immigration in autumn, especially in pool species.Habitat diversity (depth, current, and substrate; DCS) was significantly correlated with fish species diversity (FSD). However, considerable variation occurred in the relationship between the two variables, including: (I) FSD decreased in winter in shallow, less diverse habitats due to emigration, and increased in spring due to recolonization; (2) FSD increased in spring and autumn when resource availability increased; (3) FSD was least predictable from DCS in autumn, when flow regimes were low and large numbers of fish recruits were present; and (4) DCS did not predict FSD as accurately in temporally variable upstream areas where large numbers of small fish dominated the community, especially in areas with human disturbance.Young age groups (O-Il) were primarily found in shallow, ...