An amplicon-based Illumina and nanopore sequencing workflow for Chikungunya virus West Africa genotype
Idrissa Dieng,
Mignane Ndiaye,
Mouhamed Kane
et al.
Abstract:The Chikungunya virus, a global arbovirus, is currently causing a major outbreak in the Western African region, with the highest cases reported in Senegal and Burkina Faso. Recent molecular evolution analyses reveal that the strain responsible for the epidemic belongs to the West African genotype, with new mutations potentially impacting viral replication, antigenicity, and host adaptation. Real-time genomic monitoring is needed to track the virus’s spread in new regions. A scalable West African genotype ampli… Show more
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