“…For example, the microbes encoded a variety of cell-surface proteins and structural components (e.g., S-layer proteins, mucus-binding proteins, machinery for synthesis of LTA) implicated in adherence to mucus and epithelial cells and important for signaling to immune and dendritic cells (DCs) of the intestinal mucosa ( Johnson & Klaenhammer 2014, Klaenhammer et al 2002, Lightfoot et al 2015. Moreover, we were able to identify numerous regulatory regions encoding systems vital to the microbes' ability to transport and metabolize carbohydrates, lactose, prebiotics, and glycogen (Goh & Klaenhammer 2014, 2015 and sense and adapt to changes in the environment, notably, acid (Kullen & Klaenhammer 1999) and bile tolerance (Pfeiler & Klaenhammer 2009).…”