2024
DOI: 10.1186/s12859-024-05792-9
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AMRViz enables seamless genomics analysis and visualization of antimicrobial resistance

Duc Quang Le,
Son Hoang Nguyen,
Tam Thi Nguyen
et al.

Abstract: We have developed AMRViz, a toolkit for analyzing, visualizing, and managing bacterial genomics samples. The toolkit is bundled with the current best practice analysis pipeline allowing researchers to perform comprehensive analysis of a collection of samples directly from raw sequencing data with a single command line. The analysis results in a report showing the genome structure, genome annotations, antibiotic resistance and virulence profile for each sample. The pan-genome of all samples of the collection is… Show more

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