Aminopeptidase A (APA; EC 3.4.11.7) is a membrane-bound zinc metalloprotease cleaving in the brain the N-terminal aspartyl residue of angiotensin II to generate angiotensin III, which exerts a tonic stimulatory effect on the central control of blood pressure in hypertensive animals. We docked the specific APA inhibitor, glutamate phosphonate, in the three-dimensional model of the mouse APA ectodomain in the presence of Ca 2؉ . In the S1 subsite of this model, the Ca 2؉ atom was coordinated with Asp-213, Asp-218,y and Glu-215 and three water molecules, one of which formed a hydrogen bond with the carboxylate side chain of the inhibitor. We report here that the carboxylate side chain of glutamate phosphonate also formed a hydrogen bond with the alcohol side chain of Thr-348. Mutagenic replacement of Thr-348 with an aspartate, tyrosine, or serine residue led to a modification of the hydrolysis velocity, with no change in the affinity of the recombinant enzymes for the substrate GluNA, either in the absence or presence of Ca 2؉ . In the absence of Ca 2؉ , the mutations modified the substrate specificity of APA, which was nevertheless restored by the addition of Ca 2؉ . An analysis of three-dimensional models of the corresponding Thr-348 mutants revealed that the interaction between this residue and the inhibitor was abolished or disturbed, leading to a change in the position of the inhibitor in the active site. These findings demonstrate a key role of Thr-348 in substrate specificity of APA for N-terminal acidic amino acids by insuring the optimal positioning of the substrate during catalysis.Aminopeptidase A (APA; EC 3.4.11.7) 3 is a 160-kDa homodimeric type II membrane-bound monozinc aminopeptidase also activated by Ca 2ϩ (1, 2). It specifically cleaves the N-terminal glutamyl or aspartyl residue from peptide substrates, such as angiotensin in vitro (3,4). APA is strongly expressed in many tissues, including the brush border of intestinal and renal epithelial cells, and in the vascular endothelium (5). APA has also been detected in several brain nuclei involved in controlling body fluid homeostasis and cardiovascular function (6, 7). Studies with specific and selective APA inhibitors (8) have shown that APA cleaved the N-terminal aspartyl residue of brain angiotensin II to generate angiotensin III in vivo (9) and that brain angiotensin III exerts a tonic stimulatory action on the control of blood pressure in hypertensive animals (10, 11). Thus, the inhibition of brain APA with specific and selective inhibitors normalizes blood pressure in conscious spontaneously hypertensive rats or hypertensive deoxycorticosterone acetate salt rats (10 -12), suggesting that brain APA constitutes an interesting candidate target for the treatment of certain forms of hypertension (13-15). This justifies the development of potent and selective APA inhibitors crossing the blood-brain barrier after oral administration for use as centrally acting antihypertensive agents. To achieve this goal, the study of the organization of the APA ac...