Three nitrosoguanidine-induced mutants of the archaeon Methanobacterium thermoautotrophicum Marburg resistant to 5-methyltryptophan were isolated and characterized. They were found to take up L-tryptophan, as wild-type cells, via an energy-dependent, low-affinity transport system specific for L-tryptophan, with a K m of 300 M and a V max of 7 nmol/mg (dry weight)/min. Resistance to 5-methyltryptophan was not due to feedback-resistant anthranilate synthase but to constitutive expression of the trp genes, as measured by the specific activities of anthranilate synthase and tryptophan synthase, the enzymes encoded by trpEG and trpB, respectively, of the trpEGCFBAD gene cluster. Estimation of trpE mRNA obtained from mutant cells grown in minimal medium with or without L-tryptophan suggested that constitutive expression resulted from deficient transcriptional regulation. The enhanced expression of the trp genes in the mutants was found to result in intracellular L-tryptophan pools that were two-to fourfold higher than in the wild type. Sequencing of the region upstream of trpE revealed in two mutants point mutations mapping on the 5-side of the archaeal box A, whereas in the third mutant this region did not differ from that of the wild type. These results suggest that (i) in M. thermoautotrophicum the 5-methyltryptophan-resistant phenotype arises from lesions in components of a regulatory system controlling transcription of the trp genes and (ii) cis-acting sequence elements in front of the trpE promoter may form part of this system.Regulation of tryptophan biosynthesis is a paradigm of gene regulation in different organisms, ranging from the Bacteria Escherichia coli (34) and Bacillus subtilis (1, 13) to the eucaryon Saccharomyces cerevisiae (15). Much less is known about tryptophan regulation in the Archaea, even though the complete nucleotide sequences of all trp biosynthetic genes are available for Methanobacterium thermoautotrophicum (26), Haloferax volcanii (21, 22), and Methanococcus jannaschii (4).The synthesis of L-tryptophan in methanogens, as supported by 13 C labeling experiments and enzymatic analyses (11,19), is along the pathway described for Bacteria. Furthermore, M. thermoautotrophicum Marburg, for which a number of mutants are available, including auxotrophic mutants for the amino acid tryptophan (20), is one of the model systems used for gene regulation studies of Archaea (3, 27). The trp genes of M. thermoautotrophicum are organized in an operon-like trpEGCFBAD cluster, as found in Bacteria, whereas those of H. volcanii are organized in two separate operons, trpCBA and trpEGD, and those of Methanococcus jannaschii are scattered over the chromosome in at least four operons.Regulation of trp gene expression has been so far investigated only in M. thermoautotrophicum, and we have shown that in this organism those genes are mainly regulated at the transcriptional level (11). The 421-bp region in front of the M. thermoautotrophicum trp genes contains a sequence homologous with the tryptophan operator si...