The aim of our work is to summarize the current state of knowledge on gut microbiota changes in children and adolescents with mental illnesses. To our knowledge, this is the first review comparing gut microbiota changes in various mental disorders in children and adolescents.To find the relevant articles, PubMed, Web of Science and Google Scholar databases were searched. Articles in English, presenting original data and comparing the composition of gut microbiota in child psychiatric patients with gut microbiota in healthy children and adolescents were selected. Finally, we identified 42 articles eligible for our purpose. Patients with autism spectrum disorders (ASD) were investigated in majority of them. Smaller number of studies evaluating the gut microbiota in children and adolescents with Attention-deficit hyperactivity disorder (ADHD), Rett syndrome, anorexia nervosa, major depressive disorder and tic disorders were found. Main findings of research are discussed in our review, focusing on association between the gut microbiota and behavioral manifestations. To conclude, gut microbiota in children and adolescent with mental disorders is evidently different from control. Most pronounced changes are seen in children with autism spectrum disorders. These changes might be associated with often present gastrointestinal manifestations but, in general, also play a pathogenetic role in behavioral disorders. Based on research findings we assume, that there is a perspective of use of gut microbiota correction in order to improve clinical symptoms in psychiatry.