Background: The diseased-related dynamic functional network connectivity (dFNC) disruption and its relationship with cognitive impairment in hepatitis B virus-related cirrhosis (HBV-RC) patients with minimal hepatic encephalopathy (MHE) and no MHE (NMHE) remain unknown. This knowledge would help identify MHE pathophysiology and monitor disease progression in HBV-RC patients. Purpose: To investigate the dFNC in patients with NMHE and MHE and the relationship between dFNC indices with the psychometric hepatic encephalopathy score (PHES). Study type: Prospective. Population: Thirty HBV-RC patients (including 17 NMHE and 13 MHE) and 38 healthy controls (HC). Field strength/sequence: A 1.5 T MRI and gradient-echo echo-planar imaging and fast field echo three-dimensional T1weighted imaging. Assessment: The independent components, dFNC matrix and dFNC indices (mean dwell times [DT], number of states, number of transitions, and fraction time in each state), were obtained through GIFT package. Cognitive measurement and patients grouping were based on PHES tests. Statistical Tests: One-way ANOVA, chi-square test, two-sample t-test, Kruskal-Wallis test, spearman's correlation analysis and the false discovery rate. Significance level: P < 0.05. Results: Compared to HC (21.1 AE 4.02), the DT of state 1 decreased in NMHE (9.0 AE 3.04, P = 0.062, 95% confidence interval [CI] is À0.65 to 24.88) and significantly in MHE stage (1.2 AE 1.01) and was significantly correlated with PHES (r = 0.5) for all patients. The DT of state 2 increased gradually in NMHE (75.2 AE 13.10, P = 0.052, 95% CI, À54.23 to 0.28) and significantly in MHE stage (94.6 AE 15.61) when compared to HC (48.2 AE 6.97). Moreover, the connectivity between cognitive control network (CCN) and visual network (VIS) in state 1 (0.7 AE 0.79) and between default mode (DMN) and VIS in state 2 (À0.2 AE 0.29) decreased significantly in MHE when compared to HC (0.1 AE 0.68 for CCN-VIS in state 1 and 0.1 AE 0.17 for DMN-VIS for state 2). Data Conclusion: dFNC exhibited progressive impairment as the disease advances in patients with HBV-RC.