“…Genes, which were significantly associated with the pathway networks in IPA were searched in the literature for their roles in breast cancer and are compiled along with relevant references in Table
5 for upregulated genes and in Table
6 for downregulated genes. A total of 27 upregulated (ACHE
[11], HSPA1L
[12], NES
[13], P2RY2
[14], PLCG1
[15], PPARGC1A
[16], PRKCQ
[17], SNTA1
[18], ALDOA
[19], GNAO1
[20], SLC16A3
[21], TPI1
[22], ELL2
[23], CCNG1
[24], E2F6
[25], ESRRG
[26], MAPK12
[27], HSD17B7
[28], TACC2
[29], DDX1
[30], MYH1
[31], UCP1
[32], PACSIN3
[33], PGM1
[34], TLN2
[35], ADIPOR1
[36], PITX1
[37]) and 8 downregulated genes (CELSR2
[38], PRKCB
[39], KIT
[40], MAP2
[41], TDGF1
[42], ELF1
[43], RUNX1
[44], TYMS
[45]) showed association with breast cancer. Furthermore, the data files with the complete list of the upregulated and downregulated networks are presented in Additional files
3 and
4, respectively, for further reference.…”