Four forms of r immunoglobulin chains, known as the b4, b5, b6, and b9 allotypes, are products of allelic genes at the r 1 locus in domestic rabbit populations (1). A gene (K2) for a second r chain isotype (K2) is apparently present in all rabbits (2-5); one allotypic form of this gene is expressed at low levels in wild rabbits and some rabbits of b9 allotype (6-10). The Basilea strain was developed by Kelus and Weiss (11) from such a b9 rabbit in which an apparent mutation resulted in failure to produce the major type of Ig K light chains (K1). In these rabbits, the majority of Ig bear ~, light chains, and a small proportion bear r chains of the second isotype (K2) (8,(11)(12)(13). To understand the unusual r chain expression in Basilea rabbits, we have undertaken an analysis of the r genes in these animals. This report describes our investigations of the molecular basis for the loss of expression of K1 chains in the Basilea mutant.Rabbits are unusual in that they have two constant region r chain (C,) 1 genes (4, 5, 14-16). Although they have not yet been physically linked (4), the ~1 and ~2 genes are transmitted as linked traits in breeding colonies, and thus far no recombinants have been observed (6, 7, 9-11). The rl and r2 genes each have their own J (joining region) clusters (3, 5, 15). However, it is not known whether both Ca genes associate with the same variable region K chain (V~) gene pool. CK 1 genes show extensive polymorphism. Although the allelic b allotypes were first defined by serological and chemical analyses, the polymorphisms have now been studied by DNA sequencing (reviewed in l, 16-18). The DNA sequence homologies of the portions encoding K1 constant regions (C,1) range from 79% (b5 to b9) to 86% (b4 to b5) (16, 17). The known C~2 sequences are most similar to C,1 b9 (~89% homology) (17, 18). We used probes from the previously characterized cDNA (5, 18) and genomic clones to show, by Southern hybridization and restriction mapping, that both ~ 1 and K2 genes are present in DNA of Basilea rabbits, and that there are no detectable gross insertions, deletions, or other rearrangements in the K1 gene. For a finer analysis, we isolated and sequenced the mutant rlb9 gene. We found a G ~ A change in the highly conserved AG dinucleotide of the 3' acceptor splice site of the J-C intron. This substitution at ~ Abbreviations used in this paper: C, constant region; IVS, intervening sequence; J, joining region; SSC, saline sodium citrate; SDS, sodium dodecyl sulfate; UT, untranslated region; V, variable region; Y, pyrimidine.