The ATP-binding cassette (ABC) transporter TAP translocates peptides from the cytosol to awaiting MHC class I molecules in the endoplasmic reticulum. TAP is made up of the TAP1 and TAP2 polypeptides, which each possess a nucleotide binding domain (NBD). However, the role of ATP in peptide binding and translocation is poorly understood. We present biochemical and functional evidence that the NBDs of TAP1 and TAP2 are non-equivalent. Photolabeling experiments with 8-azido-ATP demonstrate a cooperative interaction between the two NBDs that can be stimulated by peptide. The substitution of key lysine residues in the Walker A motifs of TAP1 and TAP2 suggests that TAP1-mediated ATP hydrolysis is not essential for peptide translocation but that TAP2-mediated ATP hydrolysis is critical, not only for translocation, but for peptide binding.M ajor histocompatibility complex (MHC) class I molecules bind 8-to 10-aa peptides in the endoplasmic reticulum (ER). Candidate class I binding peptides are translocated from their site of generation in the cytosol into the lumen of the ER by the TAP (transporter associated with antigen processing) transporter (reviewed in refs. 1 and 2), an integral ER membrane protein whose two subunits, TAP1 and TAP2, are encoded within the MHC. Together with tapasin and the ER resident chaperones calreticulin and ERp57, TAP forms the nucleus of the class I ''loading complex,'' a macromolecular structure that potentiates peptide binding to newly synthesized class I molecules (3).TAP is a member of the ATP-binding cassette (ABC) superfamily of transporters (reviewed in refs. 4 and 5), which use ATP hydrolysis to move a variety of solutes across cellular membranes or to regulate the opening of associated ion channels. ABC transporters share a common architecture consisting of two hydrophobic, polytopic transmembrane domains and two hydrophilic nucleotide binding domains (NBDs). The hydrophobic domains are specialized to interact with the transported solute or ion channel and generally share little homology. The cytosolic NBDs act as molecular motors that hydrolyze ATP and are highly conserved (4, 5). Both TAP subunits consist of an N-terminal hydrophobic domain followed by a C-terminal NBD. The peptide-binding site is composed of residues located on the membrane-spanning domains (6) and can accommodate a wide variety of peptides, ranging in length from 8-16 residues (7).The NBDs of both TAP1 and TAP2 contain sequence motifs that are common to all ABC transporters. These include the Walker A and B motifs, sequences involved in ATP hydrolysis, and the ABC signature motif (or C-loop; ref. 4). Whereas TAP function clearly requires ATP hydrolysis, because the non-hydrolyzable analogue ATP␥S blocks peptide translocation (8), relatively little is known about the process of peptide translocation across the ER membrane. ATP may play a role in peptide binding because, although ATP␥S has no effect on peptide binding, mutations in the NBDs of TAP1 and TAP2 that abolish nucleotide binding were found to prevent it (...