Nowadays, the quality of any food used for human consumption is, to a considerable extent, considered by its possible contribution to the
maintenance or improvement of the consumer's health. In developed countries there is increasing interest in goat milk and its derivates, the
quality of which is considered of special importance in the light of current tendencies favouring healthy eating. In particular, goat's milk is a
hypoallergenic alternative to cow's milk in the human diet. In the present work, we studied the casein alpha S1 and S2 proteins of cow, goat and
sheep for comparative analysis. We found that the amino acid sequence of these proteins is almost same in goat and sheep but there are several
changes at different base pairs when these two sequences are compared with cow. Prediction of secondary structures (GOR) was performed for
alpha s1 and s2 proteins to gain functional insights. Our in silico study revealed considerable identity in chemical properties between goat and
sheep but a considerable dissimilarity in cow with goat and sheep casein proteins. Moreover, the effect amino acid change on secondary
structures in the three species is discussed. There was no significant difference found between goat and sheep alpha S1 and S2 proteins, so
naturally both will be having same properties. The study concludes that sheep milk is another convenient alternative for the cow milk allergic
children.