“…The functional response of the community dictates response to therapy, affects clinical outcomes and provides potential novel therapeutic targets and potential novel biomarkers [96] . For example, specific virulence factors produced by P. aeruginosa , the alkyl quinolones, are promising biomarkers for pulmonary P. aeruginosa and are also potential therapeutic targets [97] , [98] , [99] . As more studies confirm that P. aeruginosa persists in airways of ‘eradicated’ patients, we anticipate that focus may switch from attempting to eradicate infection , towards manipulating the functional response of the microbiome [100] .…”