Cellulose is a linear 1,4-b-glucan polymer where the units are able to form highly ordered structures, as a result of extensive interaction through intra-and intermolecular hydrogen bonding of the three hydroxyl groups in each cellulose unit. Alkali has a substantial influence on morphological, molecular and supramolecular properties of cellulose II polymer fibres causing changes in crystallinity. These physical changes were observed herein using ATR-FTIR spectroscopy, following continuous treatment of the cellulose II fabrics with aqueous sodium hydroxide solution under varying condition parameters. Posttreatment, maxima for total crystallinity index and lateral order index, and minima for hydrogen bond intensity, were observed at concentrations of 3.3 and 4.5 mol dm -3 NaOH, when treated at 25°C and 40°C, respectively. Under these treatment conditions, it is proposed that maximum molecular reorganisation occurs in the amorphous and quasi-crystalline phases of the cellulose II polymer.