We have isolated and characterized a novel transcription factor of Hansenula polymorpha that is involved in the regulation of peroxisomal protein levels. This protein, designated Mpp1p, belongs to the family of Zn(II) 2 Cys 6 proteins. In cells deleted for the function of Mpp1p the levels of various proteins involved in peroxisome biogenesis (peroxins) and function (enzymes) are reduced compared with wild type or, in the case of the matrix protein dihydroxyacetone synthase, fully absent. Also, upon induction of mpp1 cells on methanol, the number of peroxisomes was strongly reduced relative to wild type cells and generally amounted to one organelle per cell. Remarkably, this single organelle was not susceptible to selective peroxisome degradation (pexophagy) and remained unaffected during exposure of methanol-induced cells to excess glucose conditions. We show that this mechanism is a general phenomenon in H. polymorpha in the case of cells that contain only a single peroxisome.Eukaryotic cells are thought to have evolved Ïł1.5 billion years ago. The development of cell organelles allowed primitive eukaryotes to compartmentalize specific cellular functions. Concomitantly, genetic mechanisms that control the biogenesis and function of these compartments had to be developed. Obviously, the separate classes of organelles are characterized by their specific function, as in energy metabolism (mitochondrion), degradation processes (vacuole, lysosome), or protein transport (Golgi system, endoplasmatic reticulum).Among the organelles, peroxisomes are remarkable because of their highly versatile functions most of which are related to specific metabolic pathways in the organism in which they occur. This functional flexibility is not reflected in their morphology. The organelles are invariably very simple of construction and consist of a proteinaceous matrix, surrounded by a single membrane. Nevertheless, their function varies from the oxidation of very long chain fatty acids in man, germination of oil-bearing seed and photorespiration in green plants, to the metabolism of unusual carbon and/or nitrogen sources in fungi (1). In the methylotrophic yeast Hansenula polymorpha peroxisomes are essential to support growth of cells on media containing methanol as the sole source of carbon and energy. Under these conditions many organelles that contain the key enzymes involved in methanol metabolism, alcohol oxidase (AO), 1 dihydroxyacetone synthase (DHAS), and catalase, develop in the cells. Conversely, when methanol-grown wild type (WT) cells are shifted to conditions in which the organelles are redundant for growth (e.g. glucose), they are rapidly and sequentially degraded by a process designated pexophagy (reviewed in Ref. 2). Morphological data suggest that in each cell generally a single (or few) small peroxisome(s) escape(s) the degradation process. The resistance of these organelles to degradation is thought to be of physiological advantage in that it allows the cells to quickly adapt to new environments that require new per...