Complementary DNA clones corresponding to a messenger RNA encoding a 56 kDa polypeptide have been obtained from Torpedo marmorata and Torpedo ocellata electric lobe libraries, by homology screening with a probe obtained from the putative acetylcholine transporter from the nematode Caenorhabditis elegant. The Torpedo proteins display approximately 50% overall identity to the C. elegans am-1 7 protein and 43% identity to the two vesicle monoamine transporters (VMATl and VMAT2). This family of proteins is highly conserved within 12 domains which potentially span the vesicle membrane, with little similarity within the putative i&alumina1 glycosylated loop and at the N-and C-termini. The _ 3.0 kb mRNA species is specifically expressed in the brain and highly enriched in the electric lobe of Torpedo. The Torpedo protein, expressed in CV-1 fibroblast cells, possesses a high-affinity binding site for vesamicol (& = 6 nM), a drug which blocks in vitro and in vivo acetylcholine accumulation in choline@ vesicles.