AFLP markers based genetic diversity and population structure analysis of Kadaknath: an indigenous black meat poultry breed of India

Tripathi, Shashi Bhushan; Jatav, G. P.; Malik, Anoop Anand; Joshi, Shrikant; Singh, Vivek Kumar; Negi, Madan Singh; Chauhan, Laxmi; Sharma, Shyam Sundar

doi:10.1080/10495398.2020.1865390

Cited by 4 publications

(3 citation statements)

References 22 publications

Supporting

Mentioning

Contrasting

Order By: Relevance

“…Genetic diversity of Kadaknath poultry using amplified fragment length polymorphism markers Tripathi et al 22 "Ayam Semani" in Indonesia and "Silki" in China. All these breeds of chicken share similar characteristics and traits.…”

Section: H5n1 Virus Susceptibility In Kadaknathmentioning

confidence: 99%

Kadaknath Chicken Meat Scope and Source of Animal Origin Nutrients for High Altitude Regions

Bharti

Chaurasia

2022

Def. Life. Sc. Jl.

View full text Add to dashboard Cite

Leh-Ladakh falls in the category of a high-altitude region with low oxygen, low atmospheric pressure and lack of moisture in the air, thus rendering the climate harsh. Therefore, humans staying in this region need different diets, nutrient levels, and other health supplements compared to low-lander people to thrive under these stressful conditions. Chicken meat and eggs have high biological value proteins that play an important role in nutrient supply in human diets. Among them, Kadaknath chicken meat is very famous for its nutritious brown and greyish-black flesh. Its meat contains more protein, less cholesterol and less fat. Its flesh is also known for its various medicinal properties, so it is very popular among health-conscious people. However, fresh chicken production at high-altitude is very limited due to stressful conditions, making poultry rearing very difficult and uneconomical. Kadaknath is an Indian breed of chicken from the Jhabua region of Madhya Pradesh known for its hardy nature to thrive in any harsh environment. Therefore, the Kadaknath breed can be a good choice for high-altitude due to its hardy nature and disease-resistant ability. Hence, Kadaknath chicken meat can prove to be a superfood in high-altitude and such remote regions, especially during the acclimatization period. We have recently started working on the propagation of Kadaknath chicken among the farmers of Ladakh and evaluating their meat quality and medicinal value. The present review focuses on the scope of Kadaknath chicken at Leh-Ladakh under backyard farming, its acceptance, and the advantage of its meat in providing complete nutrition to human consumers.

show abstract

Section: H5n1 Virus Susceptibility In Kadaknathmentioning

confidence: 99%

Kadaknath Chicken Meat Scope and Source of Animal Origin Nutrients for High Altitude Regions

Bharti

Chaurasia

2022

Def. Life. Sc. Jl.

View full text Add to dashboard Cite

show abstract

“…Kadaknath is considered native to the Jhabua, Alirajpur, and Dhar districts of Madhya Pradesh, but its farming has recently spread across India ( Jadhao et al, 2022 ; Tripathi et al, 2022 ). The Kadaknath breed has long been documented as a distinctive indigenous Indian breed and is also called Kali Masi or Karaknath ( Slater, 1945 ).…”

Section: Introductionmentioning

confidence: 99%

Decoding the fibromelanosis locus complex chromosomal rearrangement of black-bone chicken: genetic differentiation, selective sweeps and protein-coding changes in Kadaknath chicken

2023

View full text Add to dashboard Cite

Black-bone chicken (BBC) meat is popular for its distinctive taste and texture. A complex chromosomal rearrangement at the fibromelanosis (Fm) locus on the 20th chromosome results in increased endothelin-3 (EDN3) gene expression and is responsible for melanin hyperpigmentation in BBC. We use public long-read sequencing data of the Silkie breed to resolve high-confidence haplotypes at the Fm locus spanning both Dup1 and Dup2 regions and establish that the Fm_2 scenario is correct of the three possible scenarios of the complex chromosomal rearrangement. The relationship between Chinese and Korean BBC breeds with Kadaknath native to India is underexplored. Our data from whole-genome re-sequencing establish that all BBC breeds, including Kadaknath, share the complex chromosomal rearrangement junctions at the fibromelanosis (Fm) locus. We also identify two Fm locus proximal regions (∼70 Kb and ∼300 Kb) with signatures of selection unique to Kadaknath. These regions harbor several genes with protein-coding changes, with the bactericidal/permeability-increasing-protein-like gene having two Kadaknath-specific changes within protein domains. Our results indicate that protein-coding changes in the bactericidal/permeability-increasing-protein-like gene hitchhiked with the Fm locus in Kadaknath due to close physical linkage. Identifying this Fm locus proximal selective sweep sheds light on the genetic distinctiveness of Kadaknath compared to other BBC.

show abstract

“…Kadaknath is considered native to the Jhabua, Alirajpur, and Dhar districts of Madhya Pradesh, but its farming has recently spread across India [30, 31]. The Kadaknath breed has long been documented as a distinctive indigenous Indian breed and is also called Kali Masi or Karaknath [32].…”

Section: Introductionmentioning

confidence: 99%

Hitchhiking of bactericidal/permeability-increasing protein-like gene with the fibromelanosis locus in Kadaknath black-bone-chicken

Shinde

Sharma

Vijay

2022

Preprint

View full text Add to dashboard Cite

Black-bone-chicken (BBC) breeds are famous for their distinctive meat texture and taste. However, the relationship between BBC breeds, especially the Kadaknath breed native to India, is poorly understood. Here, we establish that all BBC breeds, including Kadaknath, share a common complex chromosomal rearrangement at the FM locus on the 20th chromosome, which is responsible for the melanin hyperpigmentation throughout the body. While we find breed-specific gene flow between BBC and commercial breeds, the shared ancestry of all BBC breeds and pattern of isolation by distance suggest Kadaknath is closely related to Tibetan BBC. Interestingly, two FM locus proximal regions (~70Kb and ~300 Kb) have signatures of selection unique to Kadaknath. These regions harbor several genes with protein-coding changes, with the Bactericidal/permeability-increasing-protein-like (BPIL) gene having two Kadaknath-specific changes within the protein domains. The absence of these changes in other BBC breeds suggests this variation arose after the separation of these breeds. Our results indicate that the rearrangement at the FM locus and protein-coding changes in the BPIL gene were selected simultaneously in Kadaknath due to close physical linkage. The identification of this FM locus proximal selective sweep sheds light on the distinctiveness of Kadaknath compared to other BBC.

show abstract

AFLP markers based genetic diversity and population structure analysis of Kadaknath: an indigenous black meat poultry breed of India

Cited by 4 publications

References 22 publications

Kadaknath Chicken Meat Scope and Source of Animal Origin Nutrients for High Altitude Regions

Kadaknath Chicken Meat Scope and Source of Animal Origin Nutrients for High Altitude Regions

Decoding the fibromelanosis locus complex chromosomal rearrangement of black-bone chicken: genetic differentiation, selective sweeps and protein-coding changes in Kadaknath chicken

Hitchhiking of bactericidal/permeability-increasing protein-like gene with the fibromelanosis locus in Kadaknath black-bone-chicken

Contact Info

Product

Resources

About