Based on a field ion microscope, a scanning helium ion microscope has been developed for surface observation and modification. High‐brightness, small‐energy‐spread, and small‐wavelength helium ion beam is produced from a trimer of the gas field ion source. High‐resolution secondary electron images and Rutherford backscattered ion images are obtained by using an Everhart–Thornley detector and a microchannel plate detector, respectively. This novel microscope provides high resolution, high depth of focus observation and precise nanofabrication on various material surfaces.