Abstract:Both well-known and emerging viruses increasingly affect humans and cause disease, sometimes with devastating impact on society. The viruses present in the biosphere are the top predators in the life chain, virtually without enemies, except perhaps the immune system, and harsh environmental physicochemical conditions restricting their dissemination. We know a lot about viruses, but do we know enough? This series of reviews is dedicated to adenoviruses (AdVs), a family of nonenveloped DNA viruses occurring in v… Show more
“…For viruses replicating in the nucleus, a key step is to transfer the viral genome to the cytoplasm. For example, human immunodeficiency virus or influenza virus use the nuclear export machineries to transport their unpackaged genomes from the nucleus to the cytoplasm ( Boulo et al., 2007 ; Cullen, 2003 ), whereas AdVs, parvoviruses, or polyomaviruses package their genome into a protein capsid and induce the rupture of the NE ( Daniels et al., 2007 ; Greber, 2020 ; Majumder et al., 2018 ; Puvion-Dutilleul et al., 1998 ; Suzuki et al., 2010 ; Tollefson et al., 1996b ). Other capsids, for instance those from herpesviruses and baculoviruses, egress from the nucleus by engaging non-disruptive processes, including budding and fusion in the nuclear membranes ( Bigalke and Heldwein, 2016 ; Blissard and Theilmann, 2018 ; Wang et al., 2018 ; Zeev-Ben-Mordehai et al., 2015 ), although herpesviruses were also reported to rupture the NE, or dilatate nuclear pores ( Grimm et al., 2012 ; Klupp et al., 2011 ; Maric et al., 2014 ; Wild et al., 2019 ).…”
Section: Discussionmentioning
confidence: 99%
“…Poorly controlled HSV-1 can give rise to encephalitis, conjunctivitis, Bell's palsy, eczema, or genital skin lesion. AdVs, in turn, infect the respiratory, ocular and digestive tracts, as well as blood cells and persist in lymphoid cells of human intestines and tonsils ( Greber, 2020 ; Greber et al., 2013 ; Greber and Flatt, 2019 ; Lion, 2014 ). Upon immunosuppression, they spread to intestinal epithelial cells by unknown pathways and cause severe morbidity and mortality ( Kosulin et al., 2016 ).…”
Imaging across scales reveals disease mechanisms in organisms, tissues, and cells. Yet, particular infection phenotypes, such as virus-induced cell lysis, have remained difficult to study. Here, we developed imaging modalities and deep learning procedures to identify herpesvirus and adenovirus (AdV) infected cells without virusspecific stainings. Fluorescence microscopy of vital DNA-dyes and live-cell imaging revealed learnable virus-specific nuclear patterns transferable to related viruses of the same family. Deep learning predicted two major AdV infection outcomes, nonlytic (nonspreading) and lytic (spreading) infections, up to about 20 hr prior to cell lysis. Using these predictive algorithms, lytic and non-lytic nuclei had the same levels of green fluorescent protein (GFP)-tagged virion proteins but lytic nuclei enriched the virion proteins faster, and collapsed more extensively upon laser-rupture than non-lytic nuclei, revealing impaired mechanical properties of lytic nuclei. Our algorithms may be used to infer infection phenotypes of emerging viruses, enhance single cell biology, and facilitate differential diagnosis of non-lytic and lytic infections.
“…For viruses replicating in the nucleus, a key step is to transfer the viral genome to the cytoplasm. For example, human immunodeficiency virus or influenza virus use the nuclear export machineries to transport their unpackaged genomes from the nucleus to the cytoplasm ( Boulo et al., 2007 ; Cullen, 2003 ), whereas AdVs, parvoviruses, or polyomaviruses package their genome into a protein capsid and induce the rupture of the NE ( Daniels et al., 2007 ; Greber, 2020 ; Majumder et al., 2018 ; Puvion-Dutilleul et al., 1998 ; Suzuki et al., 2010 ; Tollefson et al., 1996b ). Other capsids, for instance those from herpesviruses and baculoviruses, egress from the nucleus by engaging non-disruptive processes, including budding and fusion in the nuclear membranes ( Bigalke and Heldwein, 2016 ; Blissard and Theilmann, 2018 ; Wang et al., 2018 ; Zeev-Ben-Mordehai et al., 2015 ), although herpesviruses were also reported to rupture the NE, or dilatate nuclear pores ( Grimm et al., 2012 ; Klupp et al., 2011 ; Maric et al., 2014 ; Wild et al., 2019 ).…”
Section: Discussionmentioning
confidence: 99%
“…Poorly controlled HSV-1 can give rise to encephalitis, conjunctivitis, Bell's palsy, eczema, or genital skin lesion. AdVs, in turn, infect the respiratory, ocular and digestive tracts, as well as blood cells and persist in lymphoid cells of human intestines and tonsils ( Greber, 2020 ; Greber et al., 2013 ; Greber and Flatt, 2019 ; Lion, 2014 ). Upon immunosuppression, they spread to intestinal epithelial cells by unknown pathways and cause severe morbidity and mortality ( Kosulin et al., 2016 ).…”
Imaging across scales reveals disease mechanisms in organisms, tissues, and cells. Yet, particular infection phenotypes, such as virus-induced cell lysis, have remained difficult to study. Here, we developed imaging modalities and deep learning procedures to identify herpesvirus and adenovirus (AdV) infected cells without virusspecific stainings. Fluorescence microscopy of vital DNA-dyes and live-cell imaging revealed learnable virus-specific nuclear patterns transferable to related viruses of the same family. Deep learning predicted two major AdV infection outcomes, nonlytic (nonspreading) and lytic (spreading) infections, up to about 20 hr prior to cell lysis. Using these predictive algorithms, lytic and non-lytic nuclei had the same levels of green fluorescent protein (GFP)-tagged virion proteins but lytic nuclei enriched the virion proteins faster, and collapsed more extensively upon laser-rupture than non-lytic nuclei, revealing impaired mechanical properties of lytic nuclei. Our algorithms may be used to infer infection phenotypes of emerging viruses, enhance single cell biology, and facilitate differential diagnosis of non-lytic and lytic infections.
“…Understanding how cells control virion stability is key to pathology and advances the field of synthetic virology, for example for the development of customized gene delivery vehicles and vaccines. Human AdVs and their interactions with cells are a highly advanced model of virus-host interactions at all levels, ranging from single cell infection, immunity, persistent and acute human disease to therapy and vaccination 35,56,68,69 . Human AdV particles are composed of major and minor capsid proteins conferring structural and accessory functions, such as DNA confinement, particle stability or membrane rupture 68,70,71 .…”
Section: Discussionmentioning
confidence: 99%
“…Additional cues for uncoating are ubiquitination in the case of influenza virus, vaccinia virus, dengue virus, and AdV 29,30,31,32 . AdVs have a long history as vectors in gene therapy and vaccination, including coronavirus vaccine development, currently in late stages of clinical trials 33,34,35,36 . Human AdVs infect the gastrointestinal and respiratory tract as well as eyes 37,38,39 .…”
In eukaryotic cells, genomes from incoming DNA viruses mount two opposing reactions, viral gene expression and innate immune response, depending on genome exposure (uncoating) to either RNA-polymerases or DNA sensors. Here we show that adenovirus particles contain a tunable linchpin protein with a dual function: response to host cues for scheduled DNA release into the nucleus, and innate immunity suppression by preventing unscheduled DNA release. Scheduled DNA release required the proteasome and ubiquitination of the viral core protein V. Cells lacking the E3 ligase Mind bomb 1 (Mib1) were resistant to wild-type adenovirus infection. Viruses lacking protein V or bearing non-ubiquitinable protein V, however, readily infected Mib1 knockout cells, yet were less infectious than wild-type virus. Their genomes were poorly imported into the nucleus and remained uncoated in the cytosol, thereby enhancing chemokine and interferon production through the DNA sensor cGAS. Our data uncover how the ubiquitin-proteasome system controls the function of a virion linchpin protein suppressing pathogen-associated molecular patterns and triggers viral DNA uncoating at the nuclear pore complex for nuclear import and infection.
“…They are common pathogens in humans and animals. The ability to control and study them individually can help in the challenging determination of their infection pathway (58)(59)(60).…”
Section: Characterization Of Cpns and Adenovirusesmentioning
Understanding and controlling the individual behavior of nanoscopic matter in liquids, the environment in which many such entities are functioning, is both inherently challenging and important to many natural and man-made applications. Here, we transport individual nano-objects, from an assembly in a biological ionic solution, through a nanochannel network and confine them in electrokinetic nanovalves, created by the collaborative effect of an applied ac electric field and a rationally engineered nanotopography, locally amplifying this field. The motion of so-confined fluorescent nano-objects is tracked, and its kinetics provides important information, enabling the determination of their particle diffusion coefficient, hydrodynamic radius, and electrical conductivity, which are elucidated for artificial polystyrene nanospheres and subsequently for sub–100-nm conjugated polymer nanoparticles and adenoviruses. The on-chip, individual nano-object resolution method presented here is a powerful approach to aid research and development in broad application areas such as medicine, chemistry, and biology.
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