cFibroblasts can be reprogrammed into induced pluripotent stem cells (iPSC) by ectopic expression of key transcription factors. Current methods for the generation of integration-free iPSC are limited by the low efficiency of iPSC generation and by challenges in reprogramming methodology. Recombinant adeno-associated virus (rAAV) is a potent gene delivery vehicle capable of efficient transduction of transgenic DNA into cells. rAAV stays mainly as an episome in nondividing cells, and the extent of integration is still poorly defined for various replicating cells. In this study, we aimed to induce iPSC from mouse and human fibroblasts by using rAAV vector-mediated transient delivery of reprogramming factors. We succeeded in deriving induced pluripotent stem cells from mouse but not human fibroblasts. Unexpectedly, the rAAV vector-mediated reprogramming led to frequent genomic integration of vector sequences during the reprogramming process, independent of the amount of virus used, and to persistent expression of reprogramming factors in generated iPSC clones. It thus appears that rAAV vectors are not compatible with the derivation of integration-free iPSC.
Mouse and human somatic cells can be reprogrammed into induced pluripotent stem cells (iPSC) by ectopic expression of retrovirally delivered key transcription factors (30). Although retroviruses are effectively silenced in stem cells, they integrate randomly into genomic DNA, and there is a potential risk of virally induced tumor formation. To date, several techniques have been used for generation of nonintegrative iPSC, such as the use of plasmids, proteins, Sendai viruses, and modified RNAs (7,23,32,35). However, many of the nonintegrative methods still have severe limitations, such as the challenges in generation and purification of proteins and Sendai viruses (7, 35), the need for repeated administration of synthetic mRNA (32), and the low reprogramming efficiency of plasmid-and protein-based methods (23,35). Therefore, there is a need for efficient nonintegrative methods of reprogramming.Adeno-associated virus (AAV) is a small nonpathogenic parvovirus with a 4.7-kb single-stranded linear genome (26). The recombinant AAV (rAAV) genome does not carry rep and cap genes, which are supplied in trans from a helper plasmid during generation of viral particles in host cells (3). AAVs are potent gene delivery vehicles capable of transducing both dividing and nondividing cells (4). Transduction of postmitotic cells, such as skeletal muscle, leads mainly to formation of episomal monomeric and concatemeric circles or linear episomes, which assimilate into chromatin with a typical nucleosomal pattern (21, 25). Previously, AAV was shown to be able to integrate at a specific site, AAVS1, on human chromosome 19, although this requires the product of the AAV-carried Rep gene (29), which is unavailable in recombinant virions. In proliferating cells, nonintegrated viral genomes are unstable and are lost soon upon proliferation of the transduced cells (21). Since reprogramming ...