2021
DOI: 10.1016/j.neucom.2021.01.108
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Adding geodesic information and stochastic patch-wise image prediction for small dataset learning

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Cited by 6 publications
(4 citation statements)
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References 18 publications
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“…In our case, 30 images of support A were manually segmented with respect to the two components (i.e., inclusions and matrix) to build the training data set. Since this number of samples is insufficient to train the model properly, a patch training strategy introduced by Hammoumi et al 34 was used. This approach consists of decomposing an image into several regions on which the training will be based.…”
Section: Methodsmentioning
confidence: 99%
See 1 more Smart Citation
“…In our case, 30 images of support A were manually segmented with respect to the two components (i.e., inclusions and matrix) to build the training data set. Since this number of samples is insufficient to train the model properly, a patch training strategy introduced by Hammoumi et al 34 was used. This approach consists of decomposing an image into several regions on which the training will be based.…”
Section: Methodsmentioning
confidence: 99%
“…At the inference time, the predicted segmented image is fully assembled by a stochastic process drawing the patches with random coordinates. This stochastic assembly of patches, introduced as a stratified sampling strategy by Hammoumi et al, 34 allows to avoid edge effects at the border of patches when they are regularly distributed. The U-Net architecture adapted to our data set is shown in Figure 3 .…”
Section: Methodsmentioning
confidence: 99%
“…A binary morphological operation was performed to keep only connected components completely contained in the image and remove all those in contact with the border of the image, since in this case the full length of the microfibers is impossible to quantify. Then, a morphological analysis algorithm [40] was used to determine the geodesic length of each connected component in the resulting binary image, which renders the length of each fiber in pixel. This value can then be converted to metric units (pixel size of 2.73 µm/pixel).…”
Section: Counting Methodsmentioning
confidence: 99%
“…To address the issue of missing inter-slice information and bridge the gap further between 2D and 3D strategies, a distance transform was applied to the initial volume before slicing. This approach, introduced in [15], allows to enhance 2D images by adding geodesic information in non-textured areas. The ADS-net, trained on augmented 2D images by 3D geodesic information, can be considered somehow as a 2.5D network.…”
Section: Network Architecturementioning
confidence: 99%