“…Photon capture by rhodopsin results in the isomerization of 11- cis retinal to all- trans retinal, which triggers a series of structural changes in the receptor (Ye et al, 2010). The result of these changes is a sequence of spectrally distinct intermediate states that eventually culminate in the formation of the active metarhodopsin II ( MII ) state (reviewed in (Ernst et al, 2014; Kandori, Shichida, & Yoshizawa, 2001; Okada, Ernst, Palczewski, & Hofmann, 2001; Ritter, Elgeti, & Bartl, 2008; Shichida & Imai, 1998; Wald, 1968)). Crystal structures for many of the photointermediates of rhodopsin are now available, which provide insights about the sequence of structural changes accompanying rhodopsin activation (Choe et al, 2011; Nakamichi & Okada, 2006a, 2006b; Ruprecht, Mielke, Vogel, Villa, & Schertler, 2004; Salom et al, 2006).…”